Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 165941431

Figure

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Details

GI 165941431 see NCBI Nucleotide
Accession EU239387
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Polyporales Ganodermataceae Ganoderma Ganoderma aff. steyaertanum C16722 
Sequence ATGAAATCTTCAATCTACAAACTTCTTATGGGGCTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTACAAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAATCGTCTCGTTACAGAGACAACCTTTATGACCTCTGACCTCAAT
Structure ....((..((((((((((((.((((....)))).))))))).))))).))(((((...(((((..((((...))))))))).)))))..........((((((..(((((((...((((.(((.(((((((((...))).)))))))))))).)..))).)...))))))))).......(((((.(...)))))).........................
Method 2: Homology modeled
Energy -44.9 kcal/mol
Model 55820070
Alignment
Sbjct: ATGAAATMTTCAATCTACAAACTTCTTATGGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTAC-AGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTACAGAGACAACTTTTATGACCTCTGA-------
       ....((..(((((((((((((((((....)))))))))))).))))).))(((((...(((((..(((....-)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))..................-------
Query: ATGAAATCTTCAATCTACAAACTTCTTATGGGGCTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTACAAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAATCGTCTCGTTACAGAGACAACCTTTATGACCTCTGACCTCAAT
       ....((..((((((((((((.((((....)))).))))))).))))).))(((((...(((((..(((.....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......))))).........................
 CBCs: _____________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____________________________________________________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 94.737
II: 100
III: 100
IV: 100
Annotation Process: Mixed HMM and Genbank annotation
Start: 366
End: 586

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