Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 168119

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 168119 see NCBI Nucleotide
Accession L07141
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Hypocreomycetidae ; Hypocreales ; Clavicipitaceae ; Epichloe ; Epichloe amarillans 
Sequence ATTTCAACCCTCAAGCCCGCTGCGCGTTGGTGTTGGGGACCGGCTCGCCCGCCTCGCGGCGGCGGCCGCCCCTGAAATGAATCGGCGGTCTCGTCGCAGCCTCCTTTGCGTAGTAACACACCACCTCGCAACCGGGAGCGCGGCGCGGCCACTGCCGTAAAACGCCCAACTTCTCCAAGAGTTGA
Structure ..........((((.(.((...)).)))))..((((((..((((.((((.(((....))))))))))).)))))).......(((((((.(((.(((.((((((((((((.(((........)).))))))..))))).)).))))))..))))))).........((((((.(...))))))).
Method 2: Homology modeled
Energy -58.7 kcal/mol
Model 168114
Alignment 
Sbjct: ATTTCAACCCTCAAGCCCGCTGCGCGCTTGGTGTTGGGGACCGGCTCGCCTGCCTCGCGGCGGCGGCCGCCCCTGAAATGAATCGGCGGTCTCGTCGCAGCCTCCTTTGCGTAGTAACACACCACCTCGCAACCGGGAGCGCGGCGCGGCCACTGCCGTAAAACGCCCAACTTCTCCAAGAGTTGA
       ..........((((((.((...)).))))))..((((((..((((.((((.(((....))))))))))).)))))).......(((((((.(((.(((.((((((((((((..((........))..)))))..))))).)).))))))..))))))).........((((((......)))))).
Query: ATTTCAACCCTCAAGCCCGCTGCGCG-TTGGTGTTGGGGACCGGCTCGCCCGCCTCGCGGCGGCGGCCGCCCCTGAAATGAATCGGCGGTCTCGTCGCAGCCTCCTTTGCGTAGTAACACACCACCTCGCAACCGGGAGCGCGGCGCGGCCACTGCCGTAAAACGCCCAACTTCTCCAAGAGTTGA
       ..........((((.(.((...)).)-))))..((((((..((((.((((.(((....))))))))))).)))))).......(((((((.(((.(((.((((((((((((..((........))..)))))..))))).)).))))))..))))))).........((((((......)))))).
 CBCs: __________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: __________________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 87.5
II: 100
III: 100
IV: 100
Annotation Process: HMM annotation
Start: 342
End: 526

If you use the database please cite.