Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 11120116

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 11120116 see NCBI Nucleotide
Accession AF287675
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Viridiplantae ; Streptophyta ; Streptophytina ; Embryophyta ; Tracheophyta ; Euphyllophyta ; Spermatophyta ; Magnoliophyta ; eudicotyledons ; core eudicotyledons ; rosids ; fabids ; Fabales ; Fabaceae ; Papilionoideae ; Crotalarieae ; Pearsonia ; Pearsonia sessilifolia 
Sequence GCCCATCGTTGCCCCAGTGCCTCGGCCTCGTGCTAGGCACCGATCGGGGCGAATGCTGGCTTCCCGTGAGCAATGCCTCACGGTTGGTTGAAAACTGAGTACGTGGTGGAGGGTGCCGTGATGGATGGTGGATGAGTAAAAGCTCGAGACCTATCGTGCGTGTCACCCCCACCGGCTTTGCGACTCTATGGCCCATGAGCGTGTGTTGGTCGCCCAAGACGGGA
Structure ((((((..((((((((((((((.(((.....)))))))))...).))))))))))..)))...((((((((...).)))))))..(((((.....(((((.((((((((.((((((((((.(((.((((...(((((....)))))..))).)))))))).)).))))))))))....))..)))).))))))......(((.(..(((....)))).)))...
Method 2: Homology modeled
Energy -63.3 kcal/mol
Model 157673676
Alignment 
Sbjct: GCCCATCGTTGCCCCAGTGCCCTGGCCTCGCGCCGGGCACCGAGCGGGGCGAGTGCTGGCTTCCCGTGAGCAACGCCTCACGGTTGGTTGAAAACTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGATCGTGCGTGTCACCCCCACCGGCTTTGCGACTCTATGGCCCATGAGCGTCTGTTGGTCGCCCAAGACGG--
       ((((((..(((((((.((((((.(((.....))))))))).....))))))))))..)))...(((((((......)))))))..(((((......(((((((.(((((.(((.((((((..((.((((..((((((....)))))).)))).)).)))).))..)))))))).....)).)))))..)))))......(((((..(((....)))))))).--
Query: GCCCATCGTTGCCCCAGTGCCTCGGCCTCGTGCTAGGCACCGATCGGGGCGAATGCTGGCTTCCCGTGAGCAATGCCTCACGGTTGGTTGAAAACTGAGTACGTGGTGGAGGGTGCCGTGATGGATGGTGGATGAGTAAAAGCTCGAGACCTATCGTGCGTGTCACCCCCACCGGCTTTGCGACTCTATGGCCCATGAGCGTGTGTTGGTCGCCCAAGACGGGA
       ((((((..(((((((.((((((.(((.....))))))))).....))))))))))..)))...(((((((......)))))))..(((((......((((.((.(((((.(((.((((((..((..(((...(((((....)))))..)))..)).)))).))..)))))))).....))..))))..)))))......(((.(..(((....)))).)))...
 CBCs: _____________________(____________)_____________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____(_________________(_________)__________________)___________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 92.105
IV: 87.5
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Viridiplantae see NCBI Taxonomy
Streptophyta see NCBI Taxonomy
Streptophytina see NCBI Taxonomy
Embryophyta see NCBI Taxonomy
Tracheophyta see NCBI Taxonomy
Euphyllophyta see NCBI Taxonomy
Spermatophyta see NCBI Taxonomy
Magnoliophyta see NCBI Taxonomy
eudicotyledons see NCBI Taxonomy
core eudicotyledons see NCBI Taxonomy
rosids see NCBI Taxonomy
fabids see NCBI Taxonomy
Fabales see NCBI Taxonomy
Fabaceae see NCBI Taxonomy
Papilionoideae see NCBI Taxonomy
Crotalarieae see NCBI Taxonomy
Pearsonia see NCBI Taxonomy
Pearsonia sessilifolia see NCBI Taxonomy
169260564 (Method 3) see NCBI Nucleotide
169260565 (Method 3) see NCBI Nucleotide
Pearsonia aristata see NCBI Taxonomy
169260566 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 363
End: 586

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