Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 11120119

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 11120119 see NCBI Nucleotide
Accession AF287678
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Viridiplantae ; Streptophyta ; Streptophytina ; Embryophyta ; Tracheophyta ; Euphyllophyta ; Spermatophyta ; Magnoliophyta ; eudicotyledons ; core eudicotyledons ; rosids ; fabids ; Fabales ; Fabaceae ; Papilionoideae ; Crotalarieae ; Lebeckia ; Lebeckia sessilifolia 
Sequence GCCCATCGTTGCCCCAGTGCCCTGGCCTCGCGCTGGGCACCGAGAGGGGCGAATGCTGGCTTCCCGTGAGCAACGCCTCACGGTTGGTTGAAAACTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGATCGTGCGTGTCACCCCCACCAGCTTTGCGATTCTGTGGCCCATGAGCGTCTGTTGGTCGCCCAAGACGGGA
Structure ((((((..(((((((.((((((.(((.....))))))))).....))))))))))..)))...((((((((...).)))))))..(((((.....((((((((((((((.(((.((((((.(((.((((..((((((....)))))).)))).))))))).))..)))))))))....)).))))).))))))......(((((..(((....))))))))...
Method 2: Homology modeled
Energy -75.2 kcal/mol
Model 157673676
Alignment 
Sbjct: GCCCATCGTTGCCCCAGTGCCCTGGCCTCGCGCCGGGCACCGAGCGGGGCGAGTGCTGGCTTCCCGTGAGCAACGCCTCACGGTTGGTTGAAAACTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGATCGTGCGTGTCACCCCCACCGGCTTTGCGACTCTATGGCCCATGAGCGTCTGTTGGTCGCCCAAGACGG--
       ((((((..(((((((.((((((.(((.....))))))))).....))))))))))..)))...(((((((......)))))))..(((((......(((((((.(((((.(((.((((((..((.((((..((((((....)))))).)))).)).)))).))..)))))))).....)).)))))..)))))......(((((..(((....)))))))).--
Query: GCCCATCGTTGCCCCAGTGCCCTGGCCTCGCGCTGGGCACCGAGAGGGGCGAATGCTGGCTTCCCGTGAGCAACGCCTCACGGTTGGTTGAAAACTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGATCGTGCGTGTCACCCCCACCAGCTTTGCGATTCTGTGGCCCATGAGCGTCTGTTGGTCGCCCAAGACGGGA
       ((((((..(((((((.((((((.(((.....))))))))).....))))))))))..)))...(((((((......)))))))..(((((......(((((((.(((((.(((.((((((..((.((((..((((((....)))))).)))).)).)))).))..)))))))).....)).)))))..)))))......(((((..(((....))))))))...
 CBCs: ________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____(_________________(_________)__________________)_____________________________________________(____________________________________________________________________________________)________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Viridiplantae see NCBI Taxonomy
Streptophyta see NCBI Taxonomy
Streptophytina see NCBI Taxonomy
Embryophyta see NCBI Taxonomy
Tracheophyta see NCBI Taxonomy
Euphyllophyta see NCBI Taxonomy
Spermatophyta see NCBI Taxonomy
Magnoliophyta see NCBI Taxonomy
eudicotyledons see NCBI Taxonomy
core eudicotyledons see NCBI Taxonomy
rosids see NCBI Taxonomy
fabids see NCBI Taxonomy
Fabales see NCBI Taxonomy
Fabaceae see NCBI Taxonomy
Papilionoideae see NCBI Taxonomy
Sophoreae see NCBI Taxonomy
Sophora see NCBI Taxonomy
Sophora microphylla see NCBI Taxonomy
14715285 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 408
End: 631

If you use the database please cite.