Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 11120121

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 11120121 see NCBI Nucleotide
Accession AF287680
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Viridiplantae ; Streptophyta ; Streptophytina ; Embryophyta ; Tracheophyta ; Euphyllophyta ; Spermatophyta ; Magnoliophyta ; eudicotyledons ; core eudicotyledons ; rosids ; fabids ; Fabales ; Fabaceae ; Papilionoideae ; Crotalarieae ; Rafnia ; Rafnia ovata 
Sequence GCCCATCGTTGCCCCCGGTGCCCTGGCCTCGCGCTAGGCACCGAGCGGGGCGAATGCTGGCTTCCCGTGAGCAACGCCTCACGGTTGGTTGAAAAACTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGGTCGTGCGTGTCGCCCCCACCGGCTTTGCGACTCTGTGGCCCATGAGCGTCTGTTGGTCGCCCAAGACGGGA
Structure ((((((..(((.((((((((((.((((.....))))))))))....))))))))))..)))...((((((((...).)))))))..(((((......((((((((((((((.((((((((((.(((.((((..((((((....)))))).)))).))))))).)).))))))))))....)).))))).))))))......(((((..(((....))))))))...
Method 2: Homology modeled
Energy -78.7 kcal/mol
Model 169260423
Alignment 
Sbjct: GCCCATCGTTG-CCCCAGTGCCCTGGCCTCGCGCCAGGCACCGAGCGGGGCGAGTGCTGGCTTCCCGTGAGCAACGCCTCACGGTTGGTTG-AAAACTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGATCGTGCGTGTCACCCCCACCGGCCTTGCGACTCTATGGCCCATGAGCGTCTGTTGGTCGCCCAAGACGG--
       ((((((..(((-((((.(((((.((((.....))))))))).....))))))))))..)))...(((((((......)))))))..(((((-......(((((((.(((((.(((.((((((..((.((((..((((((....)))))).)))).)).)))).))..)))))))).....)).)))))..)))))......(((((..(((....)))))))).--
Query: GCCCATCGTTGCCCCCGGTGCCCTGGCCTCGCGCTAGGCACCGAGCGGGGCGAATGCTGGCTTCCCGTGAGCAACGCCTCACGGTTGGTTGAAAAACTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGGTCGTGCGTGTCGCCCCCACCGGCTTTGCGACTCTGTGGCCCATGAGCGTCTGTTGGTCGCCCAAGACGGGA
       ((((((..(((.((((.(((((.((((.....))))))))).....))))))))))..)))...(((((((......)))))))..(((((.......(((((((.(((((.(((.((((((..((.((((..((((((....)))))).)))).)).)))).))..)))))))).....)).)))))..)))))......(((((..(((....))))))))...
 CBCs: __________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____(__________________(_________)__________________)____________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Viridiplantae see NCBI Taxonomy
Streptophyta see NCBI Taxonomy
Streptophytina see NCBI Taxonomy
Embryophyta see NCBI Taxonomy
Tracheophyta see NCBI Taxonomy
Euphyllophyta see NCBI Taxonomy
Spermatophyta see NCBI Taxonomy
Magnoliophyta see NCBI Taxonomy
eudicotyledons see NCBI Taxonomy
core eudicotyledons see NCBI Taxonomy
rosids see NCBI Taxonomy
fabids see NCBI Taxonomy
Fabales see NCBI Taxonomy
Fabaceae see NCBI Taxonomy
Papilionoideae see NCBI Taxonomy
Crotalarieae see NCBI Taxonomy
Rafnia see NCBI Taxonomy
Rafnia angulata see NCBI Taxonomy
84616427 (Method 3) see NCBI Nucleotide
Rafnia angulata subsp. angulata see NCBI Taxonomy
84616427 (Method 3) see NCBI Nucleotide
Lotononis see NCBI Taxonomy
Lotononis lupinifolia see NCBI Taxonomy
268053785 (Method 3) see NCBI Nucleotide
Lotononis maroccana see NCBI Taxonomy
268053786 (Method 3) see NCBI Nucleotide
Lotononis tapetiformis see NCBI Taxonomy
268053787 (Method 3) see NCBI Nucleotide
Genisteae see NCBI Taxonomy
Argyrolobium see NCBI Taxonomy
Argyrolobium armindae see NCBI Taxonomy
268053781 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 398
End: 623

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