Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 169260524

Figure

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Details

GI 169260524 see NCBI Nucleotide
Accession EU347831
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Viridiplantae ; Streptophyta ; Streptophytina ; Embryophyta ; Tracheophyta ; Euphyllophyta ; Spermatophyta ; Magnoliophyta ; eudicotyledons ; core eudicotyledons ; rosids ; fabids ; Fabales ; Fabaceae ; Papilionoideae ; Crotalarieae ; Lebeckia ; Lebeckia macrantha 
Sequence GCCCATCGTTGCCCCAGTGCCTTGGCCTCGCGCTAGGCACCGAGCGGGGTGAATGCTGGCTTCCCGTGAGCAACGCCTCACGGTTGGTTGAAAATTGAGTCCGTGGTGGAGGGTGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGATCGATCGTGCGTGTCACCCCCATCGGCTTTGTGACTCTATGGCCCATGAGCGTTTGTTGGTCGCCCAAGACGGGA
Structure ((((((..(((((((.((((((.(((.....))))))))).....))))))))))..)))...((((((((...).)))))))..(((((.....((((((((((((((.((((((((((.(((.((((..((((((....)))))).)))).))))))).)).))))))))))....)).))))).))))))......(((((..(((....))))))))...
Method 2: Homology modeled
Energy -67.9 kcal/mol
Model 157673676
Alignment 
Sbjct: GCCCATCGTTGCCCCAGTGCCCTGGCCTCGCGCCGGGCACCGAGCGGGGCGAGTGCTGGCTTCCCGTGAGCAACGCCTCACGGTTGGTTGAAAACTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGATCGTGCGTGTCACCCCCACCGGCTTTGCGACTCTATGGCCCATGAGCGTCTGTTGGTCGCCCAAGACGG--
       ((((((..(((((((.((((((.(((.....))))))))).....))))))))))..)))...(((((((......)))))))..(((((......(((((((.(((((.(((.((((((..((.((((..((((((....)))))).)))).)).)))).))..)))))))).....)).)))))..)))))......(((((..(((....)))))))).--
Query: GCCCATCGTTGCCCCAGTGCCTTGGCCTCGCGCTAGGCACCGAGCGGGGTGAATGCTGGCTTCCCGTGAGCAACGCCTCACGGTTGGTTGAAAATTGAGTCCGTGGTGGAGGGTGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGATCGATCGTGCGTGTCACCCCCATCGGCTTTGTGACTCTATGGCCCATGAGCGTTTGTTGGTCGCCCAAGACGGGA
       ((((((..(((((((.((((((.(((.....))))))))).....))))))))))..)))...(((((((......)))))))..(((((......(((((((.(((((.(((.((((((..((.((((..((((((....)))))).)))).)).)))).))..)))))))).....)).)))))..)))))......(((((..(((....))))))))...
 CBCs: _____________________(____________)_____________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____(____(____________(_________)_______________)__)____________________________________________________(_____________________(_____________________)_____________________)______________________________(______________)______
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Viridiplantae see NCBI Taxonomy
Streptophyta see NCBI Taxonomy
Streptophytina see NCBI Taxonomy
Embryophyta see NCBI Taxonomy
Tracheophyta see NCBI Taxonomy
Euphyllophyta see NCBI Taxonomy
Spermatophyta see NCBI Taxonomy
Magnoliophyta see NCBI Taxonomy
eudicotyledons see NCBI Taxonomy
core eudicotyledons see NCBI Taxonomy
rosids see NCBI Taxonomy
fabids see NCBI Taxonomy
Fabales see NCBI Taxonomy
Fabaceae see NCBI Taxonomy
Papilionoideae see NCBI Taxonomy
Thermopsideae see NCBI Taxonomy
Thermopsis see NCBI Taxonomy
Thermopsis fabacea see NCBI Taxonomy
27447258 (Method 3) see NCBI Nucleotide
Thermopsis macrophylla see NCBI Taxonomy
7264263 (Method 3) see NCBI Nucleotide
Thermopsis montana see NCBI Taxonomy
27447259 (Method 3) see NCBI Nucleotide
Thermopsis divaricarpa see NCBI Taxonomy
27447260 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 497
End: 720

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