Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 171188489

Figure

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Details

GI 171188489 see NCBI Nucleotide
Accession EU526004
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Cantharellales Clavulinaceae Clavulina Clavulina sp. OSC 1064248 
Sequence ATTAAATTCTCAACTTCAGAAAGGTTATTGCCTTATTTGAATTGGATGTTGGAGGGCTTGCTGATGTTGTTGTCAGCTCCTCTTAAATGCATTAGCGGAATTTTAAGGACCGGCTTTGGTTTGATAATCCTATCTATGCCATTGCTGTGGATCTTTGTGTGTTCAGCTTCTAATGGTCTTTTGGACTGTCTCATTGGGTGAGGCATATATAGTGTCTTGA
Structure .........((((.((((((((((.(...))))).))))))))))...(.((((((...(((((((...).)))))))))))).).....(..((((((..(((((((.(((((..((((.(((((....))).)).))))..))..))).))).)).).)))).)))..)....((((...))))..................................
Method 2: Homology modeled
Energy -17.4 kcal/mol
Model 310751988
Alignment
Sbjct: ATTAAATTCTCAACTCCGAATCGATTTGTTTCGACCTCGGAGCTTGGACTTTGGAGTG--TGCTGGCGT--CTGTCGGCTCCTCTTAAATGCATCAGCGGAA-TGTAACCCCGGACATCAGTGTGATAATTGTGT-TGCGCTGTCGT--CCGAGGTATAAAAGTTC-GCTCATAATGGTC-TTCGGACAAACTTTACAATCAAATTT---------------
       .........((((((((((.((((......))))..)))))).))))..((.((((..--.((((((..--..))))))..)))).))....((.((((((.-..(((((.(((((..((((((((((....)))-)))))))..))--))).))).))....)))-))).))....(((-....)))...................---------------
Query: ATTAAATTCTCAACTTCAGAAAGGTTATTGCCTTATTTGAA--TTGGATGTTGGAGGGCTTGCTGATGTTGTTGTCAGCTCCTCTTAAATGCATTAGCGGAATTTTAAGGACCGGCTTTGGTTTGATAATCCTATCTATGCCATTGCTGTGGATCTTTGTGTGTTCAGCTTCTAATGGTCTTTTGGACTGTCTCATTGGGTGAGGCATATATAGTGTCTTGA
       .........((((.(((((.((((......))))..)))))--))))...(.((((.....((((((......))))))..)))).).....(..((((((....(((((.(((((..((((.(((((....))).)).))))..))..))).))).))....))).)))..)....(((.....)))..................................
 CBCs: _______________(_(__((_(______)_))___)_)____________________________________________________________________((__(_(___((_____________________))___)___)__))___________________________________________________________________
HCBCs: __________________(_________________)__________________________(_((______))_)____________________________(_______(_________(__(______)___)___________)________)_______________________________________________________________
Transferred percentage of helices I: 92.857
II: 91.667
III: 92.857
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured fungus see NCBI Taxonomy
284932308 (Method 3) see NCBI Nucleotide
284935917 (Method 3) see NCBI Nucleotide
284937113 (Method 3) see NCBI Nucleotide
284938751 (Method 3) see NCBI Nucleotide
284938870 (Method 3) see NCBI Nucleotide
284939008 (Method 3) see NCBI Nucleotide
284941478 (Method 3) see NCBI Nucleotide
284941605 (Method 3) see NCBI Nucleotide
284942493 (Method 3) see NCBI Nucleotide
284942912 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 402
End: 621

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