Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 171879759

Figure

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Details

GI 171879759 see NCBI Nucleotide
Accession EU557325
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetidae ; Boletales ; Suillineae ; Suillaceae ; Suillus ; Suillus lakei 
Sequence AGTAAATTCTCAACCCCTCTCGATTTGTTTCGAGCGGGCGTTTGGATAGTGGGGGCTGCCGGAGACCTGGATTTATTTCGGGACTCGGGCTCTCCTGAAATGCATCGGCTTGCGGTCGACTTTCGACTTTGCACGACAAGGCCTTCGGCGTGATAATGATCGTCGTTAGCTGAAGTGCATGAATGAACCGTCCTGCGCCTCTAATACGTCGACGCTTTCCAGCGTCTTCCTTATTGACGTTTGA
Structure .........((((((((.(((((......))))).))).).)))).....(((((..(((.(((.((((((.....)))))).))).))).)))))..........(((..((((..(((.((((..(.(((((..(..(((..(.((((((((....)))).)))))))))..))))).)..))))..))))))))))..(((((.(..((((((....)))))))....)))))........
Method 2: Homology modeled
Energy -64.5 kcal/mol
Model 176063
Alignment 
Sbjct: AGTAAATTCTCAACCCCTCTCGATTTGCTTCGAAAGGGTGCTTGGATAGTGGGGGCTGCCGGAGATCTGGACTTCTCGTCTAGGACTCGGGCTCTCCTGAAATGAATGGGCCTGCGGTCGACTTTCGACTATGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTCGCTGAAGTGCATGAATGAATGGTCCCGTGCCTCTAATGTGTCGATGCCTTCTGGCGTCTTCCTTATTGACTTTTGA
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(((((((.....))))))).))).))).))))).........((((..((((..((((((((..(((((((.....(((....((((((((....)))).)))).)))...)))))))..)))).)))))))))))).(((((....((((((....)))))).....)))))........
Query: AGTAAATTCTCAACCCCTCTCGATTTGTTTCGAGCGGGCGTTTGGATAGTGGGGGCTGCCGGAGACCTGGATTTAT--TTCGGGACTCGGGCTCTCCTGAAATGCATCGGCTTGCGGTCGACTTTCGACTTTGCACGACAAGGCCTTCGGCGTGATAATGATCGTCGTTAGCTGAAGTGCATGAATGAACCGTCCTGCGCCTCTAATACGTCGACGCTTTCCAGCGTCTTCCTTATTGACGTTTGA
       .........((((.(((..((((......))))..)))...)))).....(((((..(((.(((.((((((.....--)))))).))).))).)))))..........(((..((((..(((.((((..(.(((((.....(((....((((((((....)))).)))).)))...))))).)..))))..))))))))))..(((((....((((((....)))))).....)))))........
 CBCs: _________________________________________________________________________________________________________________________________________________________________________________________________________________________(____)_______________________
HCBCs: _________________________________________________________________(_(((_________)))_)_____________________________(_(___________________(_____________(_________________)________)__________________)_)_________(______(__________)_______)____________
Transferred percentage of helices I: 91.667
II: 94.444
III: 91.176
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Boletales see NCBI Taxonomy
Suillineae see NCBI Taxonomy
Suillaceae see NCBI Taxonomy
Suillus see NCBI Taxonomy
Suillus pictus see NCBI Taxonomy
282848468 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 387
End: 630

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