Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 175851

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 175851 see NCBI Nucleotide
Accession M91613
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetidae ; Boletales ; Suillineae ; Rhizopogonaceae ; Rhizopogon ; Rhizopogon subcaerulescens 
Sequence AGTAAATTCTCAACCCCTCTCGATTAGCTTCGAGAGGGCGCTTGGATAGTGGAGGTTGCCGGAGACTTGGATTCGTCCGAGACTCGGGCTCTTCTGAAATGCATCGGCTTGCGGTCGACTTTCGACTATGTGCGACAAGGCTTTCGGCGTGATAATGATCGCCGTTCGCTGAAGCGCATGACTGAACGTCCCGTGCCTCTAATGTGTCGACCGCTTATTATCTCTCCGGAGAGAACAGGGTCTTCCTTATTGACTTTTGA
Structure .........((((((((((((((......))))))))).).)))).....(((((..(((.(((.((((((....)))))).))).))).)))))...((((((.(((..((((..(((.(((.(.(((((((..(..(((...(((((..((...).))))))...))))..)))))))..)))).))))))))))....)))))).((((.(((.((.((((....))))))).))))))..................
Method 2: Homology modeled
Energy -74 kcal/mol
Model 21304891
Alignment 
Sbjct: AGTAAATTCTCAACCTCTCTCGATTGACTTCGAGAGGGCGCTTGGATAGTGGAGGTTGCCGGAGACTCGGATTCGTCCGAGATTCGGGCTCTTCTGAAATGCATCGGCTTGCGGACGACTTTCGACTATGTGCGACAAGGCTTTCGGCGTGATAATGATCGCCGTTCGCCGAAGCGCATGACAGAAGGTTCCGTGCCTCTAATGCGTCGACCGCTTACTATCTCTCCGGAGAGAACAGGGTCTTCCTAATTGACTTTTGA
       .........((((.(((((((((......)))))))))...)))).....(((((..(((.(((.((((((....)))))).))).))).)))))...((((((.(((..(((((..((((((...(((((((.....(((...(((((..........)))))...)))...)))))))...))))))))))))))....)))))).((((.((.....((((....))))....))))))..................
Query: AGTAAATTCTCAACCCCTCTCGATTAGCTTCGAGAGGGCGCTTGGATAGTGGAGGTTGCCGGAGACTTGGATTCGTCCGAGACTCGGGCTCTTCTGAAATGCATCGGCTTGCGGTCGACTTTCGACTATGTGCGACAAGGCTTTCGGCGTGATAATGATCGCCGTTCGCTGAAGCGCATGACTGAACGTCCCGTGCCTCTAATGTGTCGACCGCTTATTATCTCTCCGGAGAGAACAGGGTCTTCCTTATTGACTTTTGA
       .........((((.(((((((((......)))))))))...)))).....(((((..(((.(((.((((((....)))))).))).))).)))))...((((((.(((..((((...((.(((...(((((((.....(((...(((((..........)))))...)))...)))))))...))).)).)))))))....)))))).((((.((.....((((....))))....))))))..................
 CBCs: ____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _______________(____________________)__________________________(___(__________)___)_________________(_____________________________________(______________________________)__________________________________)_______________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 94.286
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Boletales see NCBI Taxonomy
Suillineae see NCBI Taxonomy
Rhizopogonaceae see NCBI Taxonomy
Rhizopogon see NCBI Taxonomy
Rhizopogon sp. StBA26-1 see NCBI Taxonomy
27753409 (Method 3) see NCBI Nucleotide
Rhizopogon sp. StBB1-3 see NCBI Taxonomy
27753410 (Method 3) see NCBI Nucleotide
Rhizopogon sp. StBD27-3 see NCBI Taxonomy
27753411 (Method 3) see NCBI Nucleotide
Rhizopogon sp. StBC29-1 see NCBI Taxonomy
27753412 (Method 3) see NCBI Nucleotide
Rhizopogon sp. StBD33-2 see NCBI Taxonomy
27753413 (Method 3) see NCBI Nucleotide
Rhizopogon sp. StBC30a-1 see NCBI Taxonomy
27753414 (Method 3) see NCBI Nucleotide
Rhizopogon sp. StBC33-1 see NCBI Taxonomy
27753415 (Method 3) see NCBI Nucleotide
Rhizopogon sp. StBD18-2 see NCBI Taxonomy
27753416 (Method 3) see NCBI Nucleotide
Rhizopogon brunsii see NCBI Taxonomy
63332855 (Method 3) see NCBI Nucleotide
63332856 (Method 3) see NCBI Nucleotide
63332857 (Method 3) see NCBI Nucleotide
63332859 (Method 3) see NCBI Nucleotide
63332860 (Method 3) see NCBI Nucleotide
63332861 (Method 3) see NCBI Nucleotide
63332862 (Method 3) see NCBI Nucleotide
63332863 (Method 3) see NCBI Nucleotide
63332864 (Method 3) see NCBI Nucleotide
63332865 (Method 3) see NCBI Nucleotide
63332866 (Method 3) see NCBI Nucleotide
63332867 (Method 3) see NCBI Nucleotide
63332868 (Method 3) see NCBI Nucleotide
63332869 (Method 3) see NCBI Nucleotide
63332870 (Method 3) see NCBI Nucleotide
63332871 (Method 3) see NCBI Nucleotide
63332872 (Method 3) see NCBI Nucleotide
63332873 (Method 3) see NCBI Nucleotide
63332874 (Method 3) see NCBI Nucleotide
63332875 (Method 3) see NCBI Nucleotide
63332876 (Method 3) see NCBI Nucleotide
63332877 (Method 3) see NCBI Nucleotide
63332878 (Method 3) see NCBI Nucleotide
63332879 (Method 3) see NCBI Nucleotide
63332880 (Method 3) see NCBI Nucleotide
63332881 (Method 3) see NCBI Nucleotide
63332882 (Method 3) see NCBI Nucleotide
63332883 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 389
End: 648

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