Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 18077772

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 18077772 see NCBI Nucleotide
Accession AF062927
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetidae ; Boletales ; Suillineae ; Rhizopogonaceae ; Rhizopogon ; Rhizopogon evadens 
Sequence AGTTAATTCATCAACCCCTCTCGATTAGCTTCGAGGGGGAGCTTGGATAGTGGGGGTTGCCGGAGACTTGGGACTAGTTCCAGGACTCGGGCTCTCCTGAAATGCATCGGCTTGCGGTCGACTTTCGACTTTGCGCGAAAAGGCTTTCGGCGTGATAATGATCGCCGTGTGCTGAAGTGCATGAATGATGGTTCCGTGCCTYTAATACGCATCGACCTTTTACTAGGTCTTTGAAATTTTGACATTTTGACCTCAAAT
Structure ..........((((((((((((((......))))))))).).)))).....(((((..(((.(((.(((((((....))))))).))).))).)))))..........(((..((((..(((((.((..(.(((((.....(((....((((((((....)))).))).))))...))))).)..))).)))))))))))..(((.(.(..(((((((......)))))...))..))))).................
Method 2: Homology modeled
Energy -60.3 kcal/mol
Model 176063
Alignment 
Sbjct: AGTAAATTC-TCAACCCCTCTCGATTTGCTTCGAAAGGGTGCTTGGATAGTGGGGGCTGCCGGAGATCTGGACTTCTCGTCTAGGACTCGGGCTCTCCTGAAATGAATGGGCCTGCGGTCGACTTTCGACTATGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTCGCTGAAGTGCATGAATGAATGGTCCCGTGCCTCTAAT--GTGTCGATGCCTTCTGGCGTCTTC--CTTATTGAC-TTTTGA--------
       .........-((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(((((((.....))))))).))).))).))))).........((((..((((..((((((((..(((((((.....(((....((((((((....)))).)))).)))...)))))))..)))).)))))))))))).((((--(....((((((....))))))...--..)))))..-......--------
Query: AGTTAATTCATCAACCCCTCTCGATTAGCTTCGAGGGGGAGCTTGGATAGTGGGGGTTGCCGGAGACTTGGGACTAGT-TCCAGGACTCGGGCTCTCCTGAAATGCATCGGCTTGCGGTCGACTTTCGACTTTGCGCGAAAAGGCTTTCGGCGTGATAATGATCGCCGTGTGCTGAAGTGCATGAATG-ATGGTTCCGTGCCTYTAATACGCATCGACCTTTTACTAGGTCTTTGAAATTTTGACATTTTGACCTCAAAT
       ..........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.((((((......-)))))).))).))).)))))..........(((..((((..(((((.((..(.(((((.....(((.....(((((((....)))).)))..)))...))))).)..))-).)))))))))))..(((...(....(((((......))))).......).))).................
 CBCs: __________________________________________________________________________________________________________________________________________________________________________________________________________________________((______))________________________________
HCBCs: __________________(________________)______________________________((_(_(_______)_)_))___________________________________(______________((_____________(_________________)________))_______________)______________________(__________)_______________________________
Transferred percentage of helices I: 100
II: 94.444
III: 88.235
IV: 81.818
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Boletales see NCBI Taxonomy
Melanogastraceae see NCBI Taxonomy
Alpova see NCBI Taxonomy
Alpova alexsmithii see NCBI Taxonomy
193297310 (Method 3) see NCBI Nucleotide
Suillineae see NCBI Taxonomy
Rhizopogonaceae see NCBI Taxonomy
Rhizopogon see NCBI Taxonomy
Rhizopogon evadens see NCBI Taxonomy
60203086 (Method 3) see NCBI Nucleotide
Rhizopogon sp. StBD22-1 see NCBI Taxonomy
27753417 (Method 3) see NCBI Nucleotide
Rhizopogon sp. SPtC6-2 see NCBI Taxonomy
27753446 (Method 3) see NCBI Nucleotide
Rhizopogon sp. OSC 110931 see NCBI Taxonomy
110555170 (Method 3) see NCBI Nucleotide
Annotation Process: Mixed HMM and Genbank annotation
Start: 470
End: 727

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