Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 18077782

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 18077782 see NCBI Nucleotide
Accession AF062937
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetidae ; Boletales ; Suillineae ; Rhizopogonaceae ; Rhizopogon ; Rhizopogon subgelatinosus 
Sequence AGTAAATTCTCAACCCCTCTCGATTAGCTTCGAGAGGGCGCTTGGATAGTGGAGGYTGCCGGAGACTTGGATTCGTCCGAGACTCGGGCTCTTCTGAAATGCATCGGCTTGCGGTCGACTTTCGACTATGTGCGACAAGGCTTTCGGCGTGATAATGATCGCCGTTCGCTGAAGCGCATGACTGAACGTCCCGTGCCTCTAATACGTCGACCGCTTATTATCTCTCCGGAGAGAACAGGTCTTCCTTATTGACTTTTGACCTCAAAT
Structure .........((((((((((((((......))))))))).).)))).....(((((..(((.(((.((((((....)))))).))).))).)))))..........(((..((((..(((.((((..(((((((..(..(((....((((((((....)))).)))).))))..)))))))..)))).))))))))))..(((((.(..(((..(((.((.(((....)))))))...)))))....)))))................
Method 2: Homology modeled
Energy -58.2 kcal/mol
Model 176063
Alignment 
Sbjct: AGTAAATTCTCAACCCCTCTCGATTTGCTTCGAAAGGGTGCTTGGATAGTGGGGGCTGCCGGAGATCTGGACTTCTCGTCTAGGACTCGGGCTCTCCTGAAATGAATGGGCCTGCGGTCGACTTTCGACTATGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTCGCTGAAGTGCATGAATGAATGGTCCCGTGCCTCTAATGTGTCGAT---------GCCTTCTGGC--------GTCTTCCTTATTGACTTTTGA--------
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(((((((.....))))))).))).))).))))).........((((..((((..((((((((..(((((((.....(((....((((((((....)))).)))).)))...)))))))..)))).)))))))))))).(((((....(((---------(((....)))--------))).....)))))........--------
Query: AGTAAATTCTCAACCCCTCTCGATTAGCTTCGAGAGGGCGCTTGGATAGTGGAGGYTGCCGGAGACTTGGA---TTCGTCCGAGACTCGGGCTCTTCTGAAATGCATCGGCTTGCGGTCGACTTTCGACTATGTGCGACAAGGCTTTCGGCGTGATAATGATCGCCGTTCGCTGAAGCGCATGACTGAAC-GTCCCGTGCCTCTAATACGTCGACCGCTTATTATCTCTCCGGAGAGAACAGGTCTTCCTTATTGACTTTTGACCTCAAAT
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.((((((---....)))))).))).))).)))))..........(((..((((..(((.((((..(((((((.....(((....((((((((....)))).)))).)))...)))))))..)))).-))))))))))..(((((....(((.........(((....)))........))).....)))))................
 CBCs: ____________________________________________________(_____________(_______________)____________)______________________________________(__________________________________________)______________________________________________(________)_____________________________________
HCBCs: _________________________________________________________________(_((___________))_)_________________________________________________(_(_____________(_________________)________)_)____________________________(______(___________(____)__________)_______)____________________
Transferred percentage of helices I: 100
II: 94.444
III: 94.118
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Boletales see NCBI Taxonomy
Suillineae see NCBI Taxonomy
Rhizopogonaceae see NCBI Taxonomy
Rhizopogon see NCBI Taxonomy
Rhizopogon rubescens see NCBI Taxonomy
14275852 (Method 2) see NCBI Nucleotide
Rhizopogon subpurpurascens see NCBI Taxonomy
21304859 (Method 3) see NCBI Nucleotide
Rhizopogon subgelatinosus see NCBI Taxonomy
21304873 (Method 3) see NCBI Nucleotide
Rhizopogon salebrosus see NCBI Taxonomy
21304882 (Method 3) see NCBI Nucleotide
Rhizopogon sp. AZ2075 see NCBI Taxonomy
21304900 (Method 3) see NCBI Nucleotide
Rhizopogon sp. PtRC-2a-5 see NCBI Taxonomy
27753384 (Method 3) see NCBI Nucleotide
Rhizopogon sp. SNFA47-1 see NCBI Taxonomy
27753422 (Method 3) see NCBI Nucleotide
Rhizopogon sp. SNFA9-1 see NCBI Taxonomy
27753423 (Method 3) see NCBI Nucleotide
Rhizopogon sp. SNFB14-1 see NCBI Taxonomy
27753424 (Method 3) see NCBI Nucleotide
Annotation Process: Mixed HMM and Genbank annotation
Start: 397
End: 663

If you use the database please cite.