Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 18481500

Figure

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Details

GI 18481500 see NCBI Nucleotide
Accession AF461564
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; environmental samples ; uncultured fungus 
Sequence ATTTAAAACCAATAAATCCATCTGGATTTGTCTTGGGCCCTGCACCGACGGTGCATCGCCTCGAAGGCATAGGTCTTTATCTGCGGACGAGTTCCTCTAGGGCTTACCGTAGGGTCGACCATCCTGACCGGTCGCTTCGGCGACTGACCATTT
Structure .............((((((....))))))(((((((((..((((((...))))))..))))..)))))...((((...((((((((..((((((.....)))))).))))))).).))))........(((((((....))))))).......
Method 2: Homology modeled
Energy -55.3 kcal/mol
Model 18481512
Alignment 
Sbjct: ATTTAAAACCAATAAATCCATCTGGATTTGCCTTGGGCCCTGCACCGACGGTGCATCGCCTCGAAGGCATAGGTCTTTATCTGCGGACGAGTTCCTCTAGGGCTTACCGTAGGGTCGACCATCCTGACCGGTCGCTTCGGCGACTGACCATTT
       .............((((((....))))))(((((((((..((((((...))))))..))))..)))))...((((....(((((((..((((((.....)))))).)))))))...))))........(((((((....))))))).......
Query: ATTTAAAACCAATAAATCCATCTGGATTTGTCTTGGGCCCTGCACCGACGGTGCATCGCCTCGAAGGCATAGGTCTTTATCTGCGGACGAGTTCCTCTAGGGCTTACCGTAGGGTCGACCATCCTGACCGGTCGCTTCGGCGACTGACCATTT
       .............((((((....))))))(((((((((..((((((...))))))..))))..)))))...((((....(((((((..((((((.....)))))).)))))))...))))........(((((((....))))))).......
 CBCs: _________________________________________________________________________________________________________________________________________________________
HCBCs: ______________________________(___________________________________)______________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Annotation Process: HMM annotation
Start: 339
End: 491

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