Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 189162226

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 189162226 see NCBI Nucleotide
Accession EU520235
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Polyporales Ganodermataceae Ganoderma Ganoderma lucidum 
Sequence ATGAAATCYTCAACCTACAAGCTTTTGTGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGCCGTTATCGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGYGGATCGGCTCTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTTATAAGACAGCTTTATGACCTCTGA
Structure .((((...)))).((((((((((.....))))))))))...(((((((((((((((((((.(((((.((((((((((.(.((.(..(.(...(.(((((((.....))))))))))).)).).))....).)).......))))))))..)).)))))))))))))))..))))..((.((.....)).))........
Method 2: Homology modeled
Energy -26.91 kcal/mol
Model 291359275
Alignment
Sbjct: ATGGAATTCTCAACTTATAAATCCTTGTGATCTATAAGCTTGGACTTGGAGGCTTGCTGGCCCTTG-CGGTCGGCTCCTCTTGAATGGATTAACTCGATTCCGTACGGATCGGCTCTCAATGGGATAATTGGCTACCCTGGGACCGTGAAGTGGTTTGGCGAGCTTCTAACCGTCCATTAAGACAACTTTTTAACATCTGA
       .(((.....))).((((((.(((.....))).))))))..((((((((((((((((((((.(((((-((((((((((((.((((...((.....(((((((.....))))))).)))))).))))......))).......))))))))...)).)))))))))))))))..))))).(((((.....)))))........
Query: ATGAAATCYTCAACCTACAAGCTTTTGTGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGCCGTTATCGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGYGGATCGGCTCTCGGTGTGATAA-TGTCTACGCCGCGACCGTGAAGC-GTTTGGCGAGCTTCTAACCGTCTTATAAGACAGCTTTATGACCTCTGA
       .(((.....))).((((((.(((.....))).))))))...(((((((((((((((((((.(.(((.(((((((.((.(.((.(....(.....(((((((.....))))))).).).)).).))...-...)).......))))))))...-).)))))))))))))))..))))..((.((.....)).))........
 CBCs: ______________(__(___(_______)___)__)____________________________________________________________________________________________________________________________________________________________________
HCBCs: ___(_____)__________(_(_____)_)__________(______________((_______(______________((_____________(_(___________)_)______))__________________________)__________))________________)__(_____________)________
Transferred percentage of helices I: 100
II: 100
III: 88
IV: 80
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma lucidum see NCBI Taxonomy
853940 (Method 3) see NCBI Nucleotide
853941 (Method 3) see NCBI Nucleotide
122831066 (Method 3) see NCBI Nucleotide
122831067 (Method 3) see NCBI Nucleotide
122831068 (Method 3) see NCBI Nucleotide
210160960 (Method 3) see NCBI Nucleotide
238632216 (Method 3) see NCBI Nucleotide
241872456 (Method 3) see NCBI Nucleotide
241872459 (Method 3) see NCBI Nucleotide
241872461 (Method 3) see NCBI Nucleotide
241872462 (Method 3) see NCBI Nucleotide
241872464 (Method 3) see NCBI Nucleotide
241872469 (Method 3) see NCBI Nucleotide
241872471 (Method 3) see NCBI Nucleotide
241872473 (Method 3) see NCBI Nucleotide
241872480 (Method 3) see NCBI Nucleotide
241872481 (Method 3) see NCBI Nucleotide
241872483 (Method 3) see NCBI Nucleotide
259018716 (Method 3) see NCBI Nucleotide
Ganoderma applanatum see NCBI Taxonomy
257479973 (Method 3) see NCBI Nucleotide
Ganoderma tsugae see NCBI Taxonomy
853943 (Method 3) see NCBI Nucleotide
853944 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 376
End: 574

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