Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 17426635

Figure

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Details

GI 17426635 see NCBI Nucleotide
Accession AJ301931
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Hypocreomycetidae ; Hypocreomycetidae incertae sedis ; Glomerellaceae ; Glomerella ; Glomerella cingulata 
Sequence ATTTCAACCCTCAAGCACCGCTTGGTTTTGGGGCCCCACGGCCGACGTGGGCCCTTAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACTAACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTTAAACCCCCAAATTTTTTCAGGTTGA
Structure ....(((...((((((...))))))..)))((((.(((((.....))))))))).....(((((((((((((((((.((((...((((.((((.((..((....))))))))..)))))))))))))..))).))))))..)))..(((.((.....)).))).
Method 2: Homology modeled
Energy -52.7 kcal/mol
Model 300872494
Alignment 
Sbjct: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCTCTACGGTTGACGTAGGCCCTTAAAGGTAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAACATTTCGTCTCGCATTGGGATTCGGAGGGACTCTAGCCGTAAAACCCCCAATTTCACTAAGGTTGA
       ....((((..((((((...)))))).))))((((.(((((.....))))))))).....(((..((((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).))))....)))..((((((.....)))))).
Query: ATTTCAACCCTCAAGCACCGCTTGGTTTTGGGGCCCCACGGCCGACGTGGGCCCTTAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAAC-TAACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTTAAACCCCCAAATTTTTTCAGGTTGA
       ....(((...((((((...))))))..)))((((.(((((.....))))))))).....(((..((((((((((((.((((...((((.((((.((..((-....))))))))..)))))))))))))..))).))))....)))..(((.((.....)).))).
 CBCs: ____________________________________(___________)____________________________________________________________________________________________________________________
HCBCs: _______________________________________________________________________________(________________________________________)____________________________________________
Transferred percentage of helices I: 90
II: 100
III: 100
IV: 83.333
Annotation Process: HMM annotation
Start: 981
End: 1144

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