Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 154002627

Figure

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Details

GI 154002627 see NCBI Nucleotide
Accession EF505596
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi environmental samples uncultured endophytic fungus 
Sequence ATGAAACCCTCTCACAAAATAAATAATTTTTATTATGATTTTTGTGGATGTTGAGTGCTGCTGTGTTACACATAGCTCACTTTAAATGTATAAGTCATCTTCTTTATATAGCAAAAAAGAAGAGATGGATTGACTTGATGTGTAATAATTTTTTTTTCATCACATTGAGGAAAGTAGCAATACTTGCCATCTTTATATTATTTTGTTGTTGAGATAGAGACTACTAAACAAACAATTTAAAATTTAAGA
Structure ...........((((((((..((((((....)))))..))))))))).....(((((..(((((((...))))))).)))))....(((.((((((.(((((((.(.(((((((((.(((((((((((..........(((((..(..((((((((((((...).))))))))).)).)))))..))))))))).).)).)))))))))))))).)))))))..)).))).....(((((...))))).
Method 2: Homology modeled
Energy -24 kcal/mol
Model 154002713
Alignment
Sbjct: ATGAAACCCTCTCACAAAATAAATAATTTTTATTATGATTTTTGTGGATGTTGAGTGCTGCTGTGTTACACATAGCTCACTTTAAATGTATAAGTCATCTTCTTTATATAGCAAAAAAGAAGAGATGGATTGACTTGATGTGTAATAATTTTTTTTTCATCACATTGAGGAAAGTAGCAACACTTGCCATCTTTATATTATTTTGTTGTTGAGATAGAGACTACTAAACAAACAATTTAAAATTTAAGA
       ...........((((((((...(((((....)))))...)))))))).....(((((..(((((((...))))))).)))))....(((.((((((.(((((((...(((((((((.((.((((((((...........((((.......(((((((((......))))))))).....))))...))))))))...)).))))))))).)))).)))))))..)).))).....(((((...))))).
Query: ATGAAACCCTCTCACAAAATAAATAATTTTTATTATGATTTTTGTGGATGTTGAGTGCTGCTGTGTTACACATAGCTCACTTTAAATGTATAAGTCATCTTCTTTATATAGCAAAAAAGAAGAGATGGATTGACTTGATGTGTAATAATTTTTTTTTCATCACATTGAGGAAAGTAGCAATACTTGCCATCTTTATATTATTTTGTTGTTGAGATAGAGACTACTAAACAAACAATTTAAAATTTAAGA
       ...........((((((((...(((((....)))))...)))))))).....(((((..(((((((...))))))).)))))....(((.((((((.(((((((...(((((((((.((.((((((((...........((((.......(((((((((......))))))))).....))))...))))))))...)).))))))))).)))).)))))))..)).))).....(((((...))))).
 CBCs: _________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____________________________________________________________________________________________________________________________________________(______________________________________)____________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured endophytic fungus see NCBI Taxonomy
154002709 (Method 3) see NCBI Nucleotide
154002730 (Method 3) see NCBI Nucleotide
154002735 (Method 3) see NCBI Nucleotide
154002751 (Method 3) see NCBI Nucleotide
154002769 (Method 3) see NCBI Nucleotide
154002789 (Method 2) see NCBI Nucleotide
154002794 (Method 3) see NCBI Nucleotide
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Pucciniomycotina see NCBI Taxonomy
Pucciniomycetes see NCBI Taxonomy
Pucciniales see NCBI Taxonomy
Pucciniaceae see NCBI Taxonomy
Puccinia see NCBI Taxonomy
Puccinia sorghi see NCBI Taxonomy
169618 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 420
End: 668

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