Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 195979290

Figure

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Details

GI 195979290 see NCBI Nucleotide
Accession EU918700
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Ganodermataceae ; Ganoderma ; Ganoderma ramosissimum 
Sequence ATGAAATCTTCAACCTATAAGCCTTTGCGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGCCCTCGTCGGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTGCGGATCGGCTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCTAATCGTCTTGTATGGAGACAACGTTATGACCTCTGA
Structure ....((..(((((((((((((((.....)))))))))).))))).))(((((...(((((((......))))))).)))))..........((((((..((..(((...((((.((.(((((((((...))).)))))))).))).)..)))...)))))))).......(((((.....))))).................
Method 2: Homology modeled
Energy -55 kcal/mol
Model 55820070
Alignment 
Sbjct: ATGAAATMTTCAATCTACAAACTTCTTATGGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTACAGAGACAACTTTTATGACCTCTGA
       ....((..(((((((((((((((((....)))))))))))).))))).))(((((...(((((..(((....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))..................
Query: ATGAAATCTTCAACCTATAAGCCTT---TGCGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGG--CCCTCGTCGGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTGCGGATCGGC-TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCG---TTTGGCGAGCTTCTAATCGTCTTG-TATGGAGACAAC-GTTATGACCTCTGA
       ....((..(((((((((((((((.(---.).)))))))))).))))).))(((((...(((((--((......))))))).)))))..........((((((..((..(((....(((.-((.(((((((((...))).)))))))).)))....)))---...)))))))).......(((((.-....)))))...-..............
 CBCs: _____________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____________(___(__(_(_(____)_)_)__)___)______________________________________________________________________________________________________________________________________________(______)______________________
Transferred percentage of helices I: 94.737
II: 92.308
III: 92.593
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Coriolaceae see NCBI Taxonomy
Fomes see NCBI Taxonomy
Fomes fomentarius see NCBI Taxonomy
262034932 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 411
End: 612

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