Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
   
Predict
   
Model
   
Annotate
   
Motif
   
Tools
 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications

ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 219813340

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 219813340 see NCBI Nucleotide
Accession FJ553554
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetidae Boletales Suillineae Suillaceae environmental samples uncultured Suillus 
Sequence AGTAAATTCTCAACCCCTCTCGATTTGCTTCGATAGGGTGCTTGGATGTTGGGGGCTGCCGGAGACACTGGACTCGTCCAGGACTCGGGCTCCTCTTAAATGAATCGGCTTGCGGTCGACTTTCGACTTTGCATGACAAGGCCTTTGGCGTGATAATGATCGCCGTTCGCCGAAGTGCAAGACAGAACGGTCCCGTGCCTCTAATGCGTCGACACCTCTCGGGGCCGTCTTCCTCATTGACGTTTGA
Structure .........(((((((((.((((......)))).)))).).)))).....(((((..(((.(((.(.(((((....)))))).))).))).)))))..........(((..((((..((((((((..(((((((..(..(((....((((((((....)))).)))).))))..))))))).).))).)))))))))))..(((((.(..(((.((....))....))))....)))))........
Method 2: Homology modeled
Energy -62.8 kcal/mol
Model 176063
Alignment
Sbjct: AGTAAATTCTCAACCCCTCTCGATTTGCTTCGAAAGGGTGCTTGGATAGTGGGGGCTGCCGGAGAT-CTGGACTTCTCGTCTAGGACTCGGGCTCTCCTGAAATGAATGGGCCTGCGGTCGACTTTCGACTATGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTCGCTGAAGTGCATGAATGAATGGTCCCGTGCCTCTAATGTGTCGATGCCTTCTGG---CGTCTTCCTTATTGACTTTTGA
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(-((((((.....))))))).))).))).))))).........((((..((((..((((((((..(((((((.....(((....((((((((....)))).)))).)))...)))))))..)))).)))))))))))).(((((....((((((....))---)))).....)))))........
Query: AGTAAATTCTCAACCCCTCTCGATTTGCTTCGATAGGGTGCTTGGATGTTGGGGGCTGCCGGAGACACTGGA---CTCGTCCAGGACTCGGGCTCCTCTTAAATGAATCGGCTTGCGGTCGACTTTCGACTTTGCATGACAAGGCCTTTGGCGTGATAATGATCGCCGTTCGCCGAAGTGCAAGACAGAACGGTCCCGTGCCTCTAATGCGTCGACACCTCTCGGGGCCGTCTTCCTCATTGACGTTTGA
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(.(((((---....)))))).))).))).)))))..........(((..((((..(((((((...(((((((.....(((....((((((((....)))).)))).)))...)))))))...))).)))))))))))..(((((....(((.((....))....))).....)))))........
 CBCs: ___________________________________________________________________________________________________________________________________(__________________________________________________)___________________________________________________________________
HCBCs: ____________________________________________________((___________(___(___________)__)__________))_____________________________________________(_______(_________________)____)__________________________________(______(_____________)_______)____________
Transferred percentage of helices I: 100
II: 94.444
III: 94.118
IV: 90.909
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Boletales see NCBI Taxonomy
Melanogastraceae see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured Melanogaster see NCBI Taxonomy
315666483 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 722
End: 968

If you use the database please cite.