Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 220966581

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 220966581 see NCBI Nucleotide
Accession FJ501554
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Polyporales Ganodermataceae Ganoderma Ganoderma lucidum/Ganoderma lucidum fusant 
Sequence ATGAAATCTTCAACCTACAAGCTTTTGTGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGCCGTTATCGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTCTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTTATAAGACAGCTTTATGACCTCTGA
Structure ....((..(((((((((((((((.....)))))))))).))))).))(((((...((((((((....)))))))).)))))..........((((((..((..(((...((((.((.(((((((((...))).)))))).))))).)..)))...)))))))).......((((....)))).................
Method 2: Homology modeled
Energy -55.9 kcal/mol
Model 55820070
Alignment
Sbjct: ATGAAATMTTCAATCTACAAACTTCTTATGGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTACAGAGACAACTTTTATGACCTCTGA
       ....((..(((((((((((((((((....)))))))))))).))))).))(((((...(((((..(((....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))..................
Query: ATGAAATCTTCAACCTACAAGCTTT---TGTGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGG--CCGTTATCGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTC-TCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCG---TTTGGCGAGCTTCTAACCGTCTTAT----AAGACAGC-TTTATGACCTCTGA
       ....((..(((((((((((((((.(---.).)))))))))).))))).))(((((...(((((--(((....)))))))).)))))..........((((((..((..(((....(((.((-.(((((((((...))).)))))).)))))....)))---...)))))))).......(((((..----)))))...-..............
 CBCs: ___________________________________________________________________(____)______________________________________________________________________________________________________________(______)______________________
HCBCs: _____________(______(___(____)___)______)_____________________________________________________________________(_________(_________________________)________)_________________________________________________________
Transferred percentage of helices I: 94.737
II: 100
III: 92.593
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured fungus see NCBI Taxonomy
284942141 (Method 3) see NCBI Nucleotide
284942234 (Method 3) see NCBI Nucleotide
284942273 (Method 3) see NCBI Nucleotide
284942446 (Method 3) see NCBI Nucleotide
284942489 (Method 3) see NCBI Nucleotide
284942502 (Method 3) see NCBI Nucleotide
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma lucidum see NCBI Taxonomy
49357481 (Method 3) see NCBI Nucleotide
90109989 (Method 3) see NCBI Nucleotide
Ganoderma sp. OE-236 see NCBI Taxonomy
49357492 (Method 3) see NCBI Nucleotide
Cantharellales see NCBI Taxonomy
Tulasnellaceae see NCBI Taxonomy
mitosporic Tulasnella see NCBI Taxonomy
Epulorhiza see NCBI Taxonomy
Epulorhiza sp. AUG 002 see NCBI Taxonomy
260159102 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 386
End: 584

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