Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 13774453

Figure

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Details

GI 13774453 see NCBI Nucleotide
Accession AF347104
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Polyporaceae ; Trichaptum ; Trichaptum abietinum 
Sequence ATGTTAATATCAACCCCGTCGGTTTGTAAATCAGACCGTTGGGTGTTGGACTTGGAGGTTCTTGCTGGCTGCAAAGTCGGCTCCTCTTGAATGCATTAGCTTGGGCCTGTTGTGCGTACTCGCGGTGTAATAAGTTTTATTCATCGTTTGGGTCGTACACTTATTGGGCTTGCTTCTAACTGTCTTCGGACAAGCATAACCTTTGACTCTGA
Structure .........(((((((((.(((((((.....))))))).)))).)))))....(((((.....(((((((....))))))).))))).((.((..(((((..((((((((((((((.((((((((((.(((((...)))))))))))..))))))))))...).))))))))))...))).))).(((((((((.......))))..)))))
Method 2: Homology modeled
Energy -56.5 kcal/mol
Model 21629936
Alignment 
Sbjct: ATGTTAATATCAACCCCGTCGGTTTGTTAATCAGACCG-TGGGTGTTGGACTTGGAGGTTCTTGCTGGCTGCAAAGTCGGCTCCTCTTGAATGTATTAGCTTGGGCCTGTTGTGCGTGCTCGCGGTGTAATAAGTTTTATTCATCGTTTGGGTCGTACACTTATTGGGCTTGCTTCTAACTGTCTTCGGACAAACATAACCTTTGACTCTGACC
       .........(((((((((.(((((((.....)))))))-)))).)))))....(((((.....(((((((....))))))).))))).((..((...(((..(((((((.((((((.((((((((((.(((((...)))))))))))..)))))))))).....))))))))))....))..)).(((((((((.......))))..)))))..
Query: ATGTTAATATCAACCCCGTCGGTTTGTAAATCAGACCGTTGGGTGTTGGACTTGGAGGTTCTTGCTGGCTGCAAAGTCGGCTCCTCTTGAATGCATTAGCTTGGGCCTGTTGTGCGTACTCGCGGTGTAATAAGTTTTATTCATCGTTTGGGTCGTACACTTATTGGGCTTGCTTCTAACTGTCTTCGGACAAGCATAACCTTTGACTCTGA--
       .........(((((((((.(((((((.....))))))).)))).)))))....(((((.....(((((((....))))))).))))).((..(....(((..(((((((.((((((.((((((((((.(((((...)))))))))))..)))))))))).....)))))))))).....)..)).(((((((((.......))))..)))))--
 CBCs: ______________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____________________________________________________________________________________________________________________(__________________________________)________________________________________(_______)____________
Transferred percentage of helices I: 100
II: 100
III: 97.143
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured fungus see NCBI Taxonomy
300252581 (Method 3) see NCBI Nucleotide
300252582 (Method 3) see NCBI Nucleotide
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Polyporaceae see NCBI Taxonomy
Trichaptum see NCBI Taxonomy
Trichaptum abietinum see NCBI Taxonomy
21518616 (Method 3) see NCBI Nucleotide
21518618 (Method 3) see NCBI Nucleotide
21518622 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 98
End: 309

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