Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 157072723

Figure

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Details

GI 157072723 see NCBI Nucleotide
Accession EF622191
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Ascomycota saccharomyceta Pezizomycotina leotiomyceta sordariomyceta Sordariomycetes Hypocreomycetidae Hypocreomycetidae incertae sedis Glomerellaceae Glomerella Glomerella acutata 
Sequence ATTTCAACCCTCAAGCACCGCTTGGTTTTGGGGCCCCACGGCACACGTGGGCCCTTGAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACTAACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAATTCTTTACAGGTTGA
Structure ....(((...((((((...))))))..)))((((.(((((.....))))))))).....(((.((((((((((((((.(((...((((.((((.((..((....))))))))..)))))))))))))..).)))))))...)))...(((((..(...)))))).
Method 2: Homology modeled
Energy -47.6 kcal/mol
Model 148807690
Alignment
Sbjct: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCTCTACGGTCGACGTAGGCCCTCAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACATTTCGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAATTTTTCA-AGGTTGA
       ....((((..((((((...)))))).))))((((.(((((.....))))))))).....(((..((((((.((((((.(((...((((.((((.((..((.....))))))))..)))))))))))))....))))))....)))...(((((.....-.))))).
Query: ATTTCAACCCTCAAGCACCGCTTGGTTTTGGGGCCCCACGGCACACGTGGGCCCTTGAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAAC-TAACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAATTCTTTACAGGTTGA
       ....(((...((((((...))))))..)))((((.(((((.....))))))))).....(((..((((((.((((((.(((...((((.((((.((..((-....))))))))..)))))))))))))....))))))....)))...(((((.......))))).
 CBCs: ____________________________________(___________)_____________________________________________________________________________________________________________________
HCBCs: ______________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 90
II: 100
III: 100
IV: 100
Annotation Process: HMM annotation
Start: 326
End: 490

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