Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 117671326

Figure

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Details

GI 117671326 see NCBI Nucleotide
Accession EF060008
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Ganodermataceae ; Ganoderma ; Ganoderma sp. UK 250593.1 
Sequence ATGAAATCTTCAACTTACGAGCTTCTTGCGAGGTTTGTAGGGTTGGACTTGGAGGCTTGTCGGTCTTTAAAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGGTTGTCGGTGTGATAATGTCTACGCCGTGACCGTGAAGCGTTTGGCAAGCTTCTAACCGTCTCGGTATAGAGACAAGTTTTATGACCTCTGA
Structure ....((..(((((((((((((((((....)))))))))))).))))).))(((((...((((((((....)))))))).)))))..........((((((..((..(((...((((.(((.(((((((((...))).)))))))))))).)..)))...)))))))).......((((((...).)))))..................
Method 2: Homology modeled
Energy -47.7 kcal/mol
Model 55820070
Alignment 
Sbjct: ATGAAATMTTCAATCTACAAACTTCTTATGGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTACAGAGACAACTTTTATGACCTCTGA
       ....((..(((((((((((((((((....)))))))))))).))))).))(((((...(((((..(((....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))..................
Query: ATGAAATCTTCAACTTACGAGCTTCTTGCGAGGTTTGTAGGGTTGGACTTGGAGGCTTGTCGGT--CTTTAAAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGGTTGTCGGTGTGATAATGTCTACGCCGTGACCGTGAAGCG---TTTGGCAAGCTTCTAACCGTCTCGGTATAGAGACAAGTTTTATGACCTCTGA
       ....((..(((((((((((((((((....)))))))))))).))))).))(((((...(((((.--((....)).))))).)))))..........((((((..((..(((....(((.(((.(((((((((...))).))))))))))))....)))---...)))))))).......(((((......)))))..................
 CBCs: _____________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____________((___(_(__(______)__)_)___))___________________________________________________________(____________________(_______________________)_____________________)_____________________________________________
Transferred percentage of helices I: 100
II: 92.308
III: 96.296
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma sp. PKB96/303 see NCBI Taxonomy
13897643 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 360
End: 567

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