Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 11830850

Figure

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Details

GI 11830850 see NCBI Nucleotide
Accession AJ132941
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Polyporaceae ; Polyporus ; Polyporus tricholoma 
Sequence ATGAAACTCTCAACCTAACAAGTTTGTAACGAGCTTGCTTAGGCTTGGACTTGGAGGCTTGCCGGCTGTTTACCCAGTCGACTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGAATCGGCTCACGGTGTGATAGTTGTCTACGCCGCGACCGTGAAGCGTTTATTGGCCAGCTTCTAATCGTCTCTTGCGAGACAATTACTTCGAACTCTGA
Structure .........(((((((((((((((((...)))))))).))))).))))....(((((...(.((((((......)))))).).)))))..........((((.((((..((((...((((.((.(((((((((....))).)))))).))))).)..)))...)..))))))))..((((.(((((....))))).)))).............
Method 2: Homology modeled
Energy -57.1 kcal/mol
Model 33325307
Alignment 
Sbjct: ATGAAATTCTCAACCTAACAAGHTTGTAACGAGCTTGCTTAGGCTTGGACTTGGAGGCTTGCCGGCTGTGHTAATATCAGTCGACTCCTCTCAAATGCATTAGCTTGGTTCTATGCGGATCGGCTTCACGGTGTGATAATTGTCTACGCCGCGACCGTGAAGCGTTTATTGACCAGCTTCTAATCGTCTCTTGCGAGACAATTACTTCGAACTCT--
       .........(((((((((((((.(((...))).)))).))))).))))....(((((.....((((((.........))))))...)))))..........((((.((((..((((....(((..((.(((((((((....))).)))))).)))))....)))).....))))))))..((((.(((((....))))).))))...........--
Query: ATGAAACTCTCAACCTAACAAGTTTGTAACGAGCTTGCTTAGGCTTGGACTTGGAGGCTTGCCGGCTGT-TTA--CCCAGTCGACTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGAATCGGC-TCACGGTGTGATAGTTGTCTACGCCGCGACCGTGAAGCGTTTATTGGCCAGCTTCTAATCGTCTCTTGCGAGACAATTACTTCGAACTCTGA
       .........(((((((((((((.(((...))).)))).))))).))))....(((((.....((((((.-...--..))))))...)))))..........((((.((((...(((....(((.-((.(((((((((....))).)))))).)))))....)))......))))))))..((((.(((((....))))).)))).............
 CBCs: _________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ____________________________________________________________________________________________________________(______________________________________________________________)_____________________________________________
Transferred percentage of helices I: 100
II: 100
III: 96.154
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Polyporaceae see NCBI Taxonomy
Polyporus see NCBI Taxonomy
Polyporus tricholoma see NCBI Taxonomy
18478613 (Method 3) see NCBI Nucleotide
18478616 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 362
End: 574

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