Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 2735

Figure

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Details

GI 2735 see NCBI Nucleotide
Accession X65481
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Hypocreomycetidae ; Hypocreales ; Nectriaceae ; Gibberella ; Gibberella pulicaris 
Sequence ATTTCAACCCTCAAGCCCAGCTTGGTGTTGGGAGCTGTCGTCTGACACTCCCCAAATACATTGGCGGTCACGTCGAGCTTCCATAGCGTAGTAATTTACACATCGTTACTGGTAATCGTCGCGGCCACGCGTTAAACCCAACTTCTGAATGTTGA
Structure ...........(((((...)))))((((((((((.((((....)))))))))..)))))..((.(((((.((.(((..((((((((((.((((...)))...)))))).))).))))).)).))))..))).......((((((...)).)))).
Method 2: Homology modeled
Energy -29.6 kcal/mol
Model 193850601
Alignment 
Sbjct: ATTTCAACCCTCAAGCCCAGCTTGGTGTTGGGAGCTGCAGTCCTGCTGCACTCCCCAAATACATTGGCGGCCACGTCGAGCTTCCATAGCGTAGTAATTTACATATCGTTACTGGTAATCGTCGCGGCCACGCCGTTAAACCCCAACTTCTGAATGTTGA
       ...........(((((...)))))((((((((((.((((((...)))))))))))..)))))..((((((((.((.(((....((((((((..(((...)))....))))).)))...))).)).))))..))))........((((........)))).
Query: ATTTCAACCCTCAAGCCCAGCTTGGTGTTGGGAGCTGTCGTC---TGACACTCCCCAAATACATTGGCGGTCACGTCGAGCTTCCATAGCGTAGTAATTTACACATCGTTACTGGTAATCGTCGCGGCCACG-CGTTAAA-CCCAACTTCTGAATGTTGA
       ...........(((((...)))))((((((((((.(((((..---))))))))))..)))))..((.(((((.((.(((....((((((((..(((...)))....))))).)))...))).)).))))..)-)).....-..((((........)))).
 CBCs: _____________________________________((_______))________________________________________________________________________________________________________________
HCBCs: _______________________________________(_____)________________________(_______________________________________________________)_________________________________
Transferred percentage of helices I: 100
II: 93.75
III: 95.833
IV: 100
Annotation Process: HMM annotation
Start: 348
End: 502

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