Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 281199963

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 281199963 see NCBI Nucleotide
Accession GU213486
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Polyporales Ganodermataceae Ganoderma Ganoderma mastoporum 
Sequence ATGAAATCTTCAACCTACAAGCTTTTTAATGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCTTTATTGGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGAGAAGCGTTTTTGGGCGAGCTTCTAGTCGTCTCTGTATAGAGACAATCTTATGACCTCTGA
Structure ........(((((((((((((((((...).))))))))))).)))))...(((((((....))))))).((((..((((((((..((((((.((..((((((....(((((..((((((((((...)))))).)))...))))))))))))))))))))..))).))))).))))..((((((....)))))).................
Method 2: Homology modeled
Energy -55.7 kcal/mol
Model 317416368
Alignment
Sbjct: ----AATCTTCAACCTACAAGCTTTTTAATGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCTTTATTGGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGAGAAGCGTTTTTGGGCGAGCTTCTAGTCGTCTCTGTATAGAGACAATCTTA----------
       ----....((((((((((((((((......))))))))))).)))))...(((((((....))))))).((((..((((((((..((((((.....((((((....(((((...((((((((.....))))).)))....)))))))))))..))))))..))).))))).))))..((((((....)))))).......----------
Query: ATGAAATCTTCAACCTACAAGCTTTTTAATGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCTTTATTGGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGAGAAGCGTTTTTGGGCGAGCTTCTAGTCGTCTCTGTATAGAGACAATCTTATGACCTCTGA
       ........((((((((((((((((......))))))))))).)))))...(((((((....))))))).((((..((((((((..((((((.....((((((....(((((...((((((((.....))))).)))....)))))))))))..))))))..))).))))).))))..((((((....)))))).................
 CBCs: __________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: __________________________________________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma lucidum see NCBI Taxonomy
90109961 (Method 3) see NCBI Nucleotide
90109999 (Method 3) see NCBI Nucleotide
241872455 (Method 3) see NCBI Nucleotide
241872463 (Method 3) see NCBI Nucleotide
241872468 (Method 3) see NCBI Nucleotide
241872474 (Method 3) see NCBI Nucleotide
241872479 (Method 3) see NCBI Nucleotide
241872482 (Method 3) see NCBI Nucleotide
Ganoderma australe see NCBI Taxonomy
63098757 (Method 3) see NCBI Nucleotide
Ganoderma oerstedii see NCBI Taxonomy
90110000 (Method 3) see NCBI Nucleotide
Ganoderma tsugae see NCBI Taxonomy
90109991 (Method 3) see NCBI Nucleotide
90109992 (Method 3) see NCBI Nucleotide
257479995 (Method 3) see NCBI Nucleotide
257479996 (Method 3) see NCBI Nucleotide
257479997 (Method 3) see NCBI Nucleotide
Ganoderma carnosum see NCBI Taxonomy
537960 (Method 3) see NCBI Nucleotide
Ganoderma sinense see NCBI Taxonomy
90109971 (Method 3) see NCBI Nucleotide
90109979 (Method 3) see NCBI Nucleotide
90109984 (Method 3) see NCBI Nucleotide
unclassified Polyporales see NCBI Taxonomy
Aphyllophorales sp. EXP0484F see NCBI Taxonomy
118084483 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 404
End: 613

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