Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 28269283

Figure

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Details

GI 28269283 see NCBI Nucleotide
Accession AF504868
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; environmental samples ; uncultured fungus 
Sequence ATGAAAATATCAACCTTGACTTGGGTTTAGTGCTCTTGTCTTGGCTTGGATTTGGCTGTTTGCCGCTCGAAAGAGTCGGCTCAGCTTAAAAGTATTAGCTGGATCTGTCTTTGAGACTTGGTTTGACTTGGCGTAATAAGTTATTTCGCTGAGGACAATCTTCGGATTGGCCGAGTTTCTGGGACGTTTGTCCGCTTTCTAATACAAGTACTAGCTTGCTAGACATGACTTTTTTATTATCTGG
Structure .........((((((.(((...((((.....)))))))....)).))))....(((((...((((.((....).).)))).)))))..........((((.(....(..(((((((.(((.((...(((((((.(.((...)))..)))))))))))))).))))....))).))))...((.(....).))....................................................
Method 2: Homology modeled
Energy -10.8 kcal/mol
Model 122831065
Alignment 
Sbjct: ATGAAATCTTCAACCTACA---AGCTTTTGTGGTTTG---TAGGCTTGGACTTGGAGGCTTGTCGGCCGTTATCGGTCGGCTCCTCTTAAATGCATTAGCTTGGT---TCCTTGCGGATCGGCT---CTCGGTGTGATAA-TGTCTACGCCGCGACCGTGAAGCG--TTTGGCGAGCTTCTAACCGTCTTATAAGACAGCTTTATGACCTCTGA-----------------------------------
       ........(((((((((((---((((.....))))))---)))).)))))...(((((...((((((((....)))))))).)))))..........((((((..---.((.(((....(((.(---(.(((((((((..-.))).)))))).)))))....)))--...)))))))).......((((....)))).................-----------------------------------
Query: ATGAAAATATCAACCTTGACTTGGGTTTAGTGCTCTTGTCTTGGCTTGGATTTGGCTGTTTGCCGCTCGAAAG-AGTCGGCTCAGCTTAAAAGTATTAGCTGGATCTGTCTTTGAGACTTGGTTTGACTTGGCGTAATAAGTTATTTCGCTGAGGACAATCTTCGGATTGGCCGAGTTTCT----GGGACGTTTGTCCGCTTTCTAATACAAGTACTAGCTTGCTAGACATGACTTTTTTATTATCTGG
       .........((((((..((...((((.....)))))).....)).))))....(((((...((((.(......-.).)))).)))))..........((((.(.......(.(((....((..(...(.(((((.(........)..))))).)).))....))).....).).))))...----((.(....).))....................................................
 CBCs: _________________(____(_(_______)_)_)__________________((__________________________))_____________________________(____(_______________(________)____________)____)_______________________(_(____)_)_____________________________________________________
HCBCs: ______________________________________________________________(___(________)___)__________________(___________(____________(_____((_(_______________)_))__)_______________)_____)________________________________________________________________________
Transferred percentage of helices I: 80
II: 76.923
III: 76
IV: 75
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured fungus see NCBI Taxonomy
299778190 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 329
End: 572

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