Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 296427694

Figure

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Details

GI 296427694 see NCBI Nucleotide
Accession HM053457
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Ganodermataceae ; Ganoderma ; Ganoderma lucidum 
Sequence ATGAAATCTTCAACCTGCAAGCTTTTGTGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGCCGTTCTTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTCCTTCGGCTCTCAGTGTGATAATGTCTACGCTGCGAAACCCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTCAGTTGGAGACAACTTTA
Structure ....((..(((((((((((((((.....)))))))))).))))).))(((((...((((((((....)))))))).)))))..........((((((..((..(((..(((((.((.(((((((((...))).)))))).))...))).)).)))...)))))))).......(((((.....))))).......
Method 2: Homology modeled
Energy -55.4 kcal/mol
Model 55820070
Alignment 
Sbjct: ATGAAATMTTCAATCTACAAACTTCTTATGGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGA---CCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTACAGAGACAACTTTTATGACCTCTGA
       ....((..(((((((((((((((((....)))))))))))).))))).))(((((...(((((..(((....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).)))))))))---)))....))).....))))))))).......(((((......)))))..................
Query: ATGAAATCTTCAACCTGCAAGCTTT---TGTGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGG--CCGTTCTTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTCCTTCGGCTC-TCAGTGTGATAATGTCTACGCTGCGAAACCCGTGAAGCG---TTTGGCGAGCTTCTAACCGTCTCAGT-TGGAGACAACTTTA-----------
       ....((..(((((((((((((((.(---.).)))))))))).))))).))(((((...(((((--(((....)))))))).)))))..........((((((..((..(((....(((.((-.(((((((((...))).)))))).))...)))....)))---...)))))))).......(((((...-..))))).......-----------
 CBCs: ___________________________________________________________________(____)___________________________________________________(__________________)________________________________________________________________________
HCBCs: _____________(__(___(___(____)___)___)__)_____________________________________________________________________(_________(_________________________)___________)_________________________________________________________
Transferred percentage of helices I: 94.737
II: 100
III: 92.593
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma lucidum see NCBI Taxonomy
90109964 (Method 3) see NCBI Nucleotide
90109965 (Method 3) see NCBI Nucleotide
Ganoderma tenue see NCBI Taxonomy
90109966 (Method 3) see NCBI Nucleotide
90109967 (Method 3) see NCBI Nucleotide
Annotation Process: Mixed HMM and Genbank annotation
Start: 400
End: 594

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