Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 298354100

Figure

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Details

GI 298354100 see NCBI Nucleotide
Accession AB509712
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Ganodermataceae ; Amauroderma ; Amauroderma rugosum 
Sequence ATGAAATCTTCAACCTAAAAGCCTTTGCGGGTTTGTTAGGATTGGACTTGGAGGCTTGTCGGCTCATGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTGCGGATCGGCTGTCGGTGTGATAATTGTCAACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTCGTTAGAGACAGATTATTGACCTCTGA
Structure ........((((((((((((((((....)))))).))))).)))))...(((((...(((((((....))))))).))))).......(..((((((...((.(((...((((.((.(((((((((....))).)))))))).))).)..)))...))))))))..)....(((((....))))).................
Method 2: Homology modeled
Energy -58.7 kcal/mol
Model 317416244
Alignment 
Sbjct: ATGAAATCTTCAACCTAAAAGCCTTTGCGGGTTTGTTAGGCTTGGACTTGGAGGCTTGTCGGCTCATTAGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAATTGTCAACGCCGCGACCGTGAAGCGTTTGGCGAGCTTATAACCGTCTCGTTAGAGACAGATTATTGACCTCTGA
       ........((((((((((((((((....)))))).))))).)))))...(((((...(((((((....))))))).))))).......((.((((((...((.(((....(((.((.(((((((((....))).)))))))).)))....)))...)))))))).))....(((((....))))).................
Query: ATGAAATCTTCAACCTAAAAGCCTTTGCGGGTTTGTTAGGATTGGACTTGGAGGCTTGTCGGCTCATGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTGCGGATCGGCTGTCGGTGTGATAATTGTCAACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTCGTTAGAGACAGATTATTGACCTCTGA
       ........((((((((((((((((....)))))).))))).)))))...(((((...(((((((....))))))).))))).......(..((((((...((.(((....(((.((.(((((((((....))).)))))))).)))....)))...))))))))..)....(((((....))))).................
 CBCs: __________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: __________________________________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 96.296
IV: 100
Annotation Process: HMM annotation
Start: 105
End: 306

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