Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 298360975

Figure

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Details

GI 298360975 see NCBI Nucleotide
Accession HM044467
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetidae Boletales Suillineae Suillaceae environmental samples uncultured Suillus 
Sequence AGTAAATTCTCAACCCCTCTCGATTTGCTTCGATAGGGTGCTTGGATACTGGGGGCTGCCGGAGACCTGGACGAAAGTCTAGGACTCGGGCTCTCCTTAAATGAATCGGCTTGCGGTCGACTTTCGACTNTGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTNGCNNAAGTGCATGAATGAATGGTNCCGTGCCTCTAATGCGTCGACGNCNTTTTGGNGTCTTCCTTATTGACTTTTGA
Structure .........(((((((((.((((......)))).)))).).)))).....(((((..(((.(((.(((((((....))))))).))).))).)))))..........(((..((((..((((((((..(((((((....((((...(((((((((....)))).)))))))))..)))))))..)))).)))))))))))..(((((.(..(((.((.(...)))))))....)))))........
Method 2: Homology modeled
Energy -58.5 kcal/mol
Model 176063
Alignment
Sbjct: AGTAAATTCTCAACCCCTCTCGATTTGCTTCGAAAGGGTGCTTGGATAGTGGGGGCTGCCGGAGATCTGGACTTCTCGTCTAGGACTCGGGCTCTCCTGAAATGAATGGGCCTGCGGTCGACTTTCGACTATGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTCGCTGAAGTGCATGAATGAATGGTCCCGTGCCTCTAATGTGTCGATG-CCTTCTGGCGTCTTCCTTATTGACTTTTGA
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(((((((.....))))))).))).))).))))).........((((..((((..((((((((..(((((((.....(((....((((((((....)))).)))).)))...)))))))..)))).)))))))))))).(((((....((((-((....)))))).....)))))........
Query: AGTAAATTCTCAACCCCTCTCGATTTGCTTCGATAGGGTGCTTGGATACTGGGGGCTGCCGGAGACCTGGACGA-AAGTCTAGGACTCGGGCTCTCCTTAAATGAATCGGCTTGCGGTCGACTTTCGACTNTGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTNGCNNAAGTGCATGAATGAATGGTNCCGTGCCTCTAATGCGTCGACGNCNTTTTGGNGTCTTCCTTATTGACTTTTGA
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(((((((..-..))))))).))).))).)))))..........(((..((((...(((((((..(.(((((......((....((((((((....)))).)))).))....))))).)..)))).))).)))))))..(((((....(((..(......).))).....)))))........
 CBCs: _______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _________________________________________________________________(_________________)__________________________________________________________________________________________________________________________________(___________)____________________
Transferred percentage of helices I: 100
II: 100
III: 88.235
IV: 81.818
Annotation Process: HMM annotation
Start: 347
End: 592

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