Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 299778149

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 299778149 see NCBI Nucleotide
Accession HM069381
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi environmental samples uncultured fungus 
Sequence ATTAAATTCTCAACCCCTCTCGATTTGCTTCGAGCGGGTGCTTGGATGTTGGGGGCTGCCGGAGACACTGGATTCGTCCAGGACTCGGGCTCCTCTTAAATGAATCGGGCTCGCGGTCGACTTTCGACTTTGCATGACAAGGCCTTTGGCGTGATAATGGTCGCCGTTCGCCGAAGTGCAAGACAGAATGGTCCCGTGCCTCTAATGCGTCGACGCCTCTAGGGGCGTCTTCCTCATTGACGTTTGA
Structure .........((((((((.(((((......))))).))).).)))).....(((((..(((.(((.(.(((((....)))))).))).))).)))))..........((((..((((..((((((((..(((((((..(..(((....((((((((....)))).)))).))))..))))))).).))).)))))))))))).(((((.(..((((((.(...))))))))....)))))........
Method 2: Homology modeled
Energy -70.3 kcal/mol
Model 176063
Alignment
Sbjct: AGTAAATTCTCAACCCCTCTCGATTTGCTTCGAAAGGGTGCTTGGATAGTGGGGGCTGCCGGAGAT-CTGGACTTCTCGTCTAGGACTCGGGCTCTCCTGAAATGAAT-GGGCCTGCGGTCGACTTTCGACTATGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTCGCTGAAGTGCATGAATGAATGGTCCCGTGCCTCTAATGTGTCGATGCCTTCT--GGCGTCTTCCTTATTGACTTTTGA
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(-((((((.....))))))).))).))).))))).........-((((..((((..((((((((..(((((((.....(((....((((((((....)))).)))).)))...)))))))..)))).)))))))))))).(((((....((((((....--)))))).....)))))........
Query: ATTAAATTCTCAACCCCTCTCGATTTGCTTCGAGCGGGTGCTTGGATGTTGGGGGCTGCCGGAGACACTGGA---TTCGTCCAGGACTCGGGCTCCTCTTAAATGAATCGGGCTCGCGGTCGACTTTCGACTTTGCATGACAAGGCCTTTGGCGTGATAATGGTCGCCGTTCGCCGAAGTGCAAGACAGAATGGTCCCGTGCCTCTAATGCGTCGACGCCTCTAGGGGCGTCTTCCTCATTGACGTTTGA
       .........((((.(((..((((......))))..)))...)))).....(((((..(((.(((.(.(((((---....)))))).))).))).)))))..........((((..((((..(((((((...(((((((.....(((....((((((((....)))).)))).)))...)))))))...))).)))))))))))).(((((....((((((......)))))).....)))))........
 CBCs: ____________________________________________________________________________________________________________________________________(__________________________________________________)__________________________________________________________________
HCBCs: ____________________________________________________((___________(___(___________)__)__________))______________________________________________(_______(_____(____)______)____)__________________________________(______(____________)_______)____________
Transferred percentage of helices I: 91.667
II: 94.444
III: 97.059
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured fungus see NCBI Taxonomy
300217704 (Method 3) see NCBI Nucleotide
uncultured ectomycorrhizal fungus see NCBI Taxonomy
239582646 (Method 3) see NCBI Nucleotide
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Boletales see NCBI Taxonomy
Suillineae see NCBI Taxonomy
Suillaceae see NCBI Taxonomy
Suillus see NCBI Taxonomy
Suillus luteus see NCBI Taxonomy
118442791 (Method 3) see NCBI Nucleotide
164374522 (Method 3) see NCBI Nucleotide
254763697 (Method 3) see NCBI Nucleotide
311404315 (Method 3) see NCBI Nucleotide
environmental samples see NCBI Taxonomy
uncultured Suillaceae see NCBI Taxonomy
205326604 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 428
End: 674

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