Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 1225971

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 1225971 see NCBI Nucleotide
Accession X74921
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Russulales ; Bondarzewiaceae ; Heterobasidion ; Heterobasidion annosum species complex ; Heterobasidion annosum 
Sequence GTGAAATTCTCAACCCTGCGCTTTTCTTGTGAAAGCGCGTGGGCTTGGACTTGGAGGCTTTGCTGGTCCTCGCGGATCGGCTCCTCTCAAATGCATTAGCGAGACCCTTGTGGTGCTGCCCCCGGTGTGATAATTGTCTACGCCGTGGGTACACCGCGATTGTGGGGGACCTGCTTCCAACCGTCGAAAGACAAACTTCATCGAAACTTGA
Structure .........((((((.(((((((((.(...))))).))))))).))))..(.(((((....(((((((.(...)))))))).))))).)........((((.(.(((((((((((.(((((.(((((((((....))).)))))).)))))))))))))....)))...).))))((.((..(((....)))....)...).)).......
Method 2: Homology modeled
Energy -50.5 kcal/mol
Model 76786575
Alignment 
Sbjct: GTGAAATTCTCAACCC--CGTCTTCTTTYTTGAAGAGCGGAGG-TTGGACTTGGAGGTCGTTGCCGGTCCTTTTGTGATCGGCTCCTCTGGAATGCATTAGCGAGACCCTTGCGGTGGCG-CCTTGGTGTGATAATTGTCTACGCCATGGACGTGCCGCGATTTCATGGGGCGCTCGCTTCGAACCGTCGCAAGAC-ACTTTCATCGAACC----
       .........(((((((--(((((((......))))).))).))-))))..(((((((.....(((((((.......))))))).)))))))........((((((.(((((((((((.((-((.(((((((((....))).)))))).)).))))))))))......)))...))))))((((...(((....)))-.......))))...----
Query: GTGAAATTCTCAACCCTGCGCTTTTCTTGTGAAAGCGCGTGGGCTTGGACTTGGAGG-CTTTGCTGGTCCTCGCG-GATCGGCTCCTCTCAAATGCATTAGCGAGACCCTTGTGGTGCTGCCCCCGGTGTGATAATTGTCTACGCCGTGGGTACACCGCGATT--GTGGGGGACCTGCTTCCAACCGTCGAAAGACAAACTTCATCGAAACTTGA
       .........((((((...((.((((......))))..))..)).))))..(.(((((-....(((((((......-))))))).))))).)........((((.(.(((((((((((.((.((.(((((((((....))).)))))).)).))))))))))..--..)))...).))))((.(...(((....)))........).)).......
 CBCs: ________________________(______)______________________________________________________________________________________(_____(_____________________)_____)______________________________________________________________
HCBCs: _____________________(____________)_______________(_____________(_______________)_________)___________(_________(__((__(_______________________________)_))__)_________________)_______________________________________
Transferred percentage of helices I: 85.714
II: 92.857
III: 96.667
IV: 85.714
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Russulales see NCBI Taxonomy
Bondarzewiaceae see NCBI Taxonomy
Heterobasidion see NCBI Taxonomy
Heterobasidion araucariae see NCBI Taxonomy
290874569 (Method 3) see NCBI Nucleotide
Heterobasidion annosum species complex see NCBI Taxonomy
Heterobasidion annosum see NCBI Taxonomy
56406633 (Method 3) see NCBI Nucleotide
Heterobasidion parviporum see NCBI Taxonomy
284026310 (Method 3) see NCBI Nucleotide
290874557 (Method 3) see NCBI Nucleotide
290874558 (Method 3) see NCBI Nucleotide
290874560 (Method 3) see NCBI Nucleotide
290874561 (Method 3) see NCBI Nucleotide
290874562 (Method 3) see NCBI Nucleotide
Heterobasidion abietinum see NCBI Taxonomy
290874559 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 367
End: 577

If you use the database please cite.