Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 305676762

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 305676762 see NCBI Nucleotide
Accession AF166499
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetidae ; Boletales ; Suillineae ; Suillaceae ; Suillus ; Suillus amabilis 
Sequence AGTAAATTCTCAACCCCTCTCGATTTGTTTCGAGCGGGTGTTTGGATAGTGGGGGCTGCCGGAGACCTGGATTTATTTCNGGACTCGGGCTCTCCTGAAATGCATCGGCTTGCNGTTGACTTTCGACTTTGCATGACAAGGCCTTCGGCGTGATAATGATCGTCGTTAGCTGAAGTGCATGAATGAACCGTCCTGCGCCTCTAATACGTCGACGCTTTCCAGCGTCTTCTTATTGACGTTT
Structure .........((((((((.(((((......))))).))).).)))).....(((((..(((.(((.((((((.....)))))).))).))).)))))..........(((..((((..(((.((((..(.(((((..(..(((..(.((((((((....)))).)))))))))..))))).)..))))..))))))))))..(((((.(..((((((....)))))))...)))))......
Method 2: Homology modeled
Energy -56 kcal/mol
Model 176063
Alignment 
Sbjct: AGTAAATTCTCAACCCCTCTCGATTTGCTTCGAAAGGGTGCTTGGATAGTGGGGGCTGCCGGAGATCTGGACTTCTCGTCTAGGACTCGGGCTCTCCTGAAATGAATGGGCCTGCGGTCGACTTTCGACTATGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTCGCTGAAGTGCATGAATGAATGGTCCCGTGCCTCTAATGTGTCGATGCCTTCTGGCGTCTTCCTTATTGACTTTTGA
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(((((((.....))))))).))).))).))))).........((((..((((..((((((((..(((((((.....(((....((((((((....)))).)))).)))...)))))))..)))).)))))))))))).(((((....((((((....)))))).....)))))........
Query: AGTAAATTCTCAACCCCTCTCGATTTGTTTCGAGCGGGTGTTTGGATAGTGGGGGCTGCCGGAGACCTGGATTTAT--TTCNGGACTCGGGCTCTCCTGAAATGCATCGGCTTGCNGTTGACTTTCGACTTTGCATGACAAGGCCTTCGGCGTGATAATGATCGTCGTTAGCTGAAGTGCATGAATGAACCGTCCTGCGCCTCTAATACGTCGACGCTTTCCAGCGTCTT-CTTATTGACGTTT--
       .........((((.(((..((((......))))..)))...)))).....(((((..(((.(((.((.(((.....--))).)).))).))).)))))..........(((..((.(..(((.((((..(.(((((.....(((....((((((((....)))).)))).)))...))))).)..))))..)))).)))))..(((((....((((((....))))))..-..)))))......--
 CBCs: _________________________________________________________________________________________________________________________________________________________________________________________________________________________(____)_______________________
HCBCs: _________________________________________________________________(__((_________))__)_____________________________(___________________________________(_________________)_____________________________)_________(______(__________)_______)____________
Transferred percentage of helices I: 91.667
II: 88.889
III: 88.235
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured ectomycorrhizal fungus see NCBI Taxonomy
118722280 (Method 3) see NCBI Nucleotide
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Boletales see NCBI Taxonomy
Suillineae see NCBI Taxonomy
Suillaceae see NCBI Taxonomy
Suillus see NCBI Taxonomy
Suillus pictus see NCBI Taxonomy
118442793 (Method 3) see NCBI Nucleotide
118722267 (Method 3) see NCBI Nucleotide
118722286 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 350
End: 590

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