Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 205364292

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 205364292 see NCBI Nucleotide
Accession FJ157117
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetidae Agaricales Cortinariaceae Cortinarius Cortinarius cf. balteatus SMI15 
Sequence ATTAATATATCAACCTCTTCAGCTTTTGCTTGTTGAGTGTTGGATGTGGGGGTCTTTTTGCTGGTCTTCCCAGGTCAGCTCCCCTGAAATGCATTAGCGGAACAATTTGTGGACCGTTCATTGGTGTGATAACTATCTACGCTATTGACGTGAAGCAGTTCAGCTTCTAACAGTCCATTCACTTGGACAAATTTTCATTAATGTGA
Structure .........((((((((..((((....))).)..))).)))))...((((((.......((((((((....)))))))).))))))...((..(((((.((((..((((((......(((.(((((((((....))).)))))).)))))))))...)))).)))...))))(((((......)))))..................
Method 2: Homology modeled
Energy -42.8 kcal/mol
Model 84993956
Alignment
Sbjct: ATTAATATATCAACCTCTTCGACTTCTGTCTGTTGAGCGTTGGATGTGGGGGTATTTTTTGCTGGTCTCTCTGAGGTCAGCTCCCCTAAAATGTATTAGCGGAACAATTTGTGGACCGTTCATTGGTGTGATAACTATCTACGCTATTGACGCAAAGCAGTTCGGCTTCTAACAGTCCATTGACTTGGACAAATTTTCATTAATGT--
       .........((((((((..((((....))).)..))).)))))...((((((........(((((((((...))))))))).))))))...(((...(((.((((..((((((......(((.(((((((((....))).)))))).)))))))))...)))).)))....)))(((((......)))))................--
Query: ATTAATATATCAACCTCTTCAGCTTTTGCTTGTTGAGTGTTGGATGTGGGGGT-CTTTTTGCTGGTCT-TCCCAGGTCAGCTCCCCTGAAATGCATTAGCGGAACAATTTGTGGACCGTTCATTGGTGTGATAACTATCTACGCTATTGACGTGAAGCAGTTCAGCTTCTAACAGTCCATTCACTTGGACAAATTTTCATTAATGTGA
       .........((((((((..((((....))).)..))).)))))...((((((.-......((((((((-....)))))))).))))))...((....(((.((((..((((((......(((.(((((((((....))).)))))).)))))))))...)))).))).....))(((((......)))))..................
 CBCs: ____________________((______))__________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ______________________________________________(________________________________________)_____________________((_________________________________________))______________________________________________________
Transferred percentage of helices I: 100
II: 93.333
III: 96.429
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Corticiales see NCBI Taxonomy
Punctulariaceae see NCBI Taxonomy
Punctulariopsis see NCBI Taxonomy
Punctulariopsis subglobispora see NCBI Taxonomy
1279897 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 412
End: 617

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