Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 3114850

Figure

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Details

GI 3114850 see NCBI Nucleotide
Accession Z95573
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Viridiplantae ; Streptophyta ; Streptophytina ; Embryophyta ; Tracheophyta ; Euphyllophyta ; Spermatophyta ; Magnoliophyta ; eudicotyledons ; core eudicotyledons ; rosids ; fabids ; Fabales ; Fabaceae ; Papilionoideae ; Crotalarieae ; Lotononis ; Lotononis galpinii 
Sequence CATCGTTGCCCCAGTGCCTTGGCCTCGTGCTAGGCACCGAATGGGGCGAATTCTGGCTTCCCGCGAGCAATGCCTCACGGTTGGTTGAAAACTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGATCGTGCGTGTCACCCCCACCGGCATTGCGACTCTATGGCCCATGGGGTCTNNNNNNNNNNNNNNNNNNNN
Structure .((..(((((((((((((.((((.....)))))))))....))))))))))...((((..(((.((((...).))).)))..)))).......(((((((((((((.(((.((((((.(((.((((..((((((....)))))).)))).))))))).))..)))))))))....)).)))))...((.((....)).))....................
Method 2: Homology modeled
Energy -65.2 kcal/mol
Model 83031654
Alignment 
Sbjct: GCACATCGTTGCCCCAGTGCCCTGGCCACGTGCTAGGCACCAAGTGGGGCGAATGTTGGCTTTCCGCGAGCAGTGTCTCACGGTTGGTTGAAATGTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTTAAAGCTCGAGACCGATCGTGCGTGTCACCCCCACCAGATTTGTGACTCTGTGACCCATGGGGGTCTGTT----------------
       ..((((..(((((((((((((.((((.....)))))))))....)))))))))))).((((..(((.(((......))).)))..)))).......(((((((((((((.(((.((((((..((.((((..((((((....)))))).)))).)).)))).))..)))))))))....)).)))))...(((((....)))))....----------------
Query: ---CATCGTTGCCCCAGTGCCTTGGCCTCGTGCTAGGCACCGAATGGGGCGAATTCTGGCTTCCCGCGAGCAATGCCTCACGGTTGGTTGAAAACTGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGATCGTGCGTGTCACCCCCACCGGCATTGCGACTCTATGGCCCATGGGGTCTNNNNNNNNNNNNNNNNNNNN
       ---.((..(((((((((((((.((((.....)))))))))....))))))))))...((((..(((.(((......))).)))..)))).......(((((((((((((.(((.((((((..((.((((..((((((....)))))).)))).)).)))).))..)))))))))....)).)))))...((.((....)).))....................
 CBCs: ______________________________________________________________________________________________________________________________________________________________________________________________(__________)_____________________
HCBCs: _______________________________________________________________________________________________________(_____________________________________________________________________)_______________(____________)____________________
Transferred percentage of helices I: 90.476
II: 100
III: 100
IV: 80
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Viridiplantae see NCBI Taxonomy
Streptophyta see NCBI Taxonomy
Streptophytina see NCBI Taxonomy
Embryophyta see NCBI Taxonomy
Tracheophyta see NCBI Taxonomy
Euphyllophyta see NCBI Taxonomy
Spermatophyta see NCBI Taxonomy
Magnoliophyta see NCBI Taxonomy
eudicotyledons see NCBI Taxonomy
core eudicotyledons see NCBI Taxonomy
rosids see NCBI Taxonomy
fabids see NCBI Taxonomy
Fabales see NCBI Taxonomy
Fabaceae see NCBI Taxonomy
Papilionoideae see NCBI Taxonomy
Crotalarieae see NCBI Taxonomy
Lebeckia see NCBI Taxonomy
Lebeckia pauciflora see NCBI Taxonomy
169260555 (Method 3) see NCBI Nucleotide
Annotation Process: Genbank annotation
Start: 1
End: 220

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