Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 2573

Figure

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Details

GI 2573 see NCBI Nucleotide
Accession Z18998
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Hypocreomycetidae ; Hypocreomycetidae incertae sedis ; Glomerellaceae ; Glomerella ; Glomerella cingulata 
Sequence ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACAGCTGATGTAGGCCCTCAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACTTTACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCAATTCTCCAAAGGTTGA
Structure ....((((..((((((...)))))).))))((((.(((((.....))))))))).....(((.(((((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).)))))...)))..(((((.(...).))))).
Method 2: Homology modeled
Energy -49.7 kcal/mol
Model 117557332
Alignment 
Sbjct: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCTCTACGGTTGACGTAGGCCCTTAAAGGTAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAACATTTCGTCTCGCATTGGGATTCGGAGGGACTCTAGCCGTAAAACCCCCAATTTTACTAAGGTTGA
       ....((((..((((((...)))))).))))((((.(((((.....))))))))).....(((..((((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).))))....)))..(((((((...))))))).
Query: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACAGCTGATGTAGGCCCTCAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACTTTACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCAATTCTCCAAAGGTTGA
       ....((((..((((((...)))))).))))((((.(((((.....))))))))).....(((..((((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).))))....)))..(((((.(...).))))).
 CBCs: _______________________________________(_____)_______________________________________________________________________________________________________________________
HCBCs: _______________________________________________________________________________(________________________________________)____________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 85.714
Annotation Process: HMM annotation
Start: 20
End: 184

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