Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 322366641

Figure

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Details

GI 322366641 see NCBI Nucleotide
Accession HQ882205
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetidae ; Boletales ; Boletineae ; Boletaceae ; Boletus ; Boletus speciosus 
Sequence ATCGAATTTCTCAATCCATGATCTTGACTTGGTCTTGGATTTGGTCTTGGGAGCTGCTGGCGGCAAAAAGCTGTTGGCTCTCCTGAAATGCATTAGCAAAGGACGGCGGGTCTTTGACGTGCACGGCTTTCGACGTGATAATGATCGTCGTGGCTGGAGCGTTAGGACATGCATTGAATCGTCTGTGTTGCTTCTAATCCTCTAGGCTAGCCTCAAGTCGGTCAGCTCAGCTACTAGTCGGCCATGTGGCCAACGAACGTCGAGCATGGGCTGAGCTTTTGGGCTTGTCTTCTATTTCGAAACTTGA
Structure ..........((((((((.((((..(...))))).)))).))))....(((((..(..(.(((((......))))).)))))))...........(((.........(..((((((.(.(.(.(((.((.(((((.(.(...).)))))).))))))))))..))))).)))........((....)).......................................................................................................................
Method 2: Homology modeled
Energy -2.3 kcal/mol
Model 122831065
Alignment 
Sbjct: -ATGAAATCTTCAACCTACAAGCTTTTGTGGTTTGTAGGCTTGGACTTGGAGGCT--TGTCGGCCGTTATCGGTCGGCTCCTCTTAAATGCATTAGCT--------TGGTTCCTTG-CG-GATCGGCTCTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTGG-CGAGCTTCTAACCGTCTTATAAGACAGCTTTATGACCTCTGA------------------------------------------------------------------------------------------------------
       -........(((((((((((((((.....)))))))))).)))))...(((((..--.((((((((....)))))))).)))))..........((((--------((...((.((-(.-...(((.((.(((((((((...))).)))))).)))))....)))...))-)))))).......((((....)))).................------------------------------------------------------------------------------------------------------
Query: ATCGAATTTCTCAATCCATGATCTTGACTTGGTCTTGGATTTGGTCTTGGGAGCTGCTGGCGGCAAAAAGCTGTTGGCTCTCCTGAAATGCATTAGCAAAGGACGGCGGGTCTTTGACGTGCACGGCTTTCGACGTGATAATGAT--CGTCGTGGC--TGGAGCGTTAGGACATGCATTGAATCGTCT----GTGTTGCTTCTAATCCTCTAGGCTAGCCTCAAGTCGGTCAGCTCAGCTACTAGTCGGCCATGTGGCCAACGAACGTCGAGCATGGGCTGAGCTTTTGGGCTTGTCTTCTATTTCGAAACTTGA
       ..........((((((((.((((.......)))).)))).))))....(((((.....(.(((((......))))).).)))))...........(((.........(...((.((.(.......(.((.(((((.(.(...).)--))))).)))--....)))...)).).)))........((.(----).)).......................................................................................................................
 CBCs: ______________(_(__(_(_________)_)__)_)___________((____________(______)________))_______________(__________________________________(________________)_______________________)_____________________________________________________________________________________________________________________________________________
HCBCs: _____________________________________________________________(____________)_____________________________________(______________((____(__(_______)___)____))_____________)_______________((_(____)_))_______________________________________________________________________________________________________________________
Transferred percentage of helices I: 80
II: 84.615
III: 76
IV: 75
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Boletales see NCBI Taxonomy
Boletineae see NCBI Taxonomy
Boletaceae see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured Boletus see NCBI Taxonomy
238804996 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 416
End: 722

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