Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 3688531

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 3688531 see NCBI Nucleotide
Accession AJ006670
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Polyporales Polyporaceae Spongipellis Spongipellis delectans 
Sequence ATGGTATTCTCAATACCCCAAGTCTTTGCGGATGAGGGTGTATTGGATTTGGAGGTTTATGCTGGCGTTTGTCGGCTCCTCTTAAATGCATTAGCAAAGATGTTACTGCTACTCTTCAGCGTGATAATTGTCTACGCTGCCGTTGTACGGTATAAATAAGTCTCTGCTTCTAATCGTCTTCGGACAATTTCTTGACATCTGA
Structure .......(((.((((((((..((((....))))).)))))).).))).(.(((((...(.((((((....)))))))))))).)........((((.(((((((((((.((.((..(((((((((....))).))))))..)..)))))))).)..)..)))).))))((.(((.(((....))).)))....)).......
Method 2: Homology modeled
Energy -32 kcal/mol
Model 57116622
Alignment
Sbjct: ATGGTATTCTCAATACCCTAAATCTTTGCGGATGAGGGTGTATTGGACTTGGAGGTTTTTCTTTGCTGGCTTCATTGTCGGCTCCTCTGAAATACATTAGTGCAGATATTGCTGTTACTCTTCAGTGTGATAATTGTCTACGCTGCAGATGTATGGCGAATTGAAGTCTGTGCTTCTAATCGTCTTTGGACAATTT-TTGAAATTCGA
       .......(((..(((((((..((((....)))).)))))))...))).(((((((.........((((((......)))))).)))))))........(((((((((.(((((((...(((.(((((((((....))).)))))).)))...)))))))......)))))))))((.(((.(((....))).))).-..)).......
Query: ATGGTATTCTCAATACCCCAAGTCTTTGCGGATGAGGGTGTATTGGATTTGGAGGTT----TATGCTGGCGT--TTGTCGGCTCCTCTTAAATGCATTAGCAAAGATGTTACTGCTACTCTTCAGCGTGATAATTGTCTACGCTGCCGTTGTACGGTATAAATAAGTCTCTGCTTCTAATCGTCTTCGGACAATTTCTTGACATCTGA
       .......(((..((((((...((((....))))..))))))...))).(.(((((..----...((((((..--..)))))).))))).)........((((.((((..(((((.....(..(((((((((....))).))))))..).....))))).......)))).))))((.(((.(((....))).)))....)).......
 CBCs: ______________________________________________________________________________________________________________(_____________________________________________)___________________________________________________
HCBCs: _____________________(__________)___________________________________________________________________((_______(___(___________(_______________)___________)___)____________))____________________________________
Transferred percentage of helices I: 92.857
II: 92.308
III: 82.143
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Coriolaceae see NCBI Taxonomy
Cerrena see NCBI Taxonomy
Cerrena consors see NCBI Taxonomy
226346459 (Method 3) see NCBI Nucleotide
226346460 (Method 3) see NCBI Nucleotide
226346461 (Method 3) see NCBI Nucleotide
226346462 (Method 3) see NCBI Nucleotide
unclassified Coriolaceae see NCBI Taxonomy
Coriolaceae sp. TM06 see NCBI Taxonomy
325560457 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 398
End: 599

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