Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 38455347

Figure

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Details

GI 38455347 see NCBI Nucleotide
Accession AY456341
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Ganodermataceae ; Ganoderma ; Ganoderma lucidum 
Sequence ATGAAATCTTCAACCTACAAGCTTTTGTGGATTGTAGGCTTGGACTTGGAGGCTTGTCGGCCGTTATTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTTATAGACAGCTTTATGACCTCTGA
Structure ....((..((((((((((((.((.....)).))))))).))))).))(((((...((((((((....)))))))).)))))..........((((((..((..(((...((((.((.(((((((((...))).)))))).))))).)..)))...)))))))).......((((...)))).................
Method 2: Homology modeled
Energy -48.8 kcal/mol
Model 55820070
Alignment 
Sbjct: ATGAAATMTTCAATCTACAAACTTCTTATGGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTACAGAGACAACTTTTATGACCTCTGA
       ....((..(((((((((((((((((....)))))))))))).))))).))(((((...(((((..(((....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))..................
Query: ATGAAATCTTCAACCTACAAGCTTT---TGTGGATTGTAGGCTTGGACTTGGAGGCTTGTCGG--CCGTTATTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTT-TCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCG---TTTGGCGAGCTTCTAACCGTCTTAT-----AGACAGC-TTTATGACCTCTGA
       ....((..((((((((((((.((.(---.).)).))))))).))))).))(((((...(((((--(((....)))))))).)))))..........((((((..((..(((....(((.((-.(((((((((...))).)))))).)))))....)))---...)))))))).......((((...-----))))...-..............
 CBCs: ___________________________________________________________________(____)____________________________________________________________________________________________________________________________________________
HCBCs: _____________(__________(____)__________)____________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 89.474
II: 100
III: 92.593
IV: 80
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Polyporaceae see NCBI Taxonomy
Perenniporia see NCBI Taxonomy
Perenniporia subacida see NCBI Taxonomy
226844818 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 386
End: 583

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