Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 4235188

Figure

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Details

GI 4235188 see NCBI Nucleotide
Accession U85800
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Corticiales Corticiaceae Butlerelfia Butlerelfia eustacei 
Sequence ATGAAATCATCAACCACGATGCTTCTTAGTGTCGCTGGCTTGGACTTGGGGATCTGCTGGCTTGTCAAGAGTCGGCTTCCCTTGAATGCATTAGTCGGGTGCCTTGCTCGAGAAGTGTGATAATTATCATTCACTGATCGTCGAGGAGCTTTGTCTCGGCTTCTAACCGCATTGGAAACGATGCAATTTTGAACATCTGA
Structure .........(((((((((((((.(...))))))).))).))))..(((((((...((((((((.....)))))))))..)))))).......((((((((((((((..(((..((((((((....))))..))))..))).))))).....)).))))))).......(((((.(...))))))................
Method 2: Homology modeled
Energy -39.9 kcal/mol
Model 226349027
Alignment
Sbjct: ATGAAATCATCAACCACGTTGCTTTAGTGCGCCG-TGGCTTGGACTTGGGGGTTTGCGGGCGT-TCTAGCGTCGGCTTCCCTTGAATGCATTAGTCGGGCGCCCTTTGCTCGAGAAGTGTGATAATTATCATTCACTGATCGACGAGGGACCTTGTCTCGGCTTCTAACCGCAT--GCTTGCATGCATCTTTGACACATCTGA
       .........(((((((((.(((......))).))-))).))))..(((((((...((.(((((-....))))).))..))))))).......(((((((((.((((((.((((..((((.(((....)))...))))..))))))))))....)).))))))).......((((--(....))))).................
Query: ATGAAATCATCAACCACGATGCTTCTTAGTGTCGCTGGCTTGGACTTGGGGATCTGCTGGCTTGTCAAGAGTCGGCTTCCCTTGAATGCATTAGTCGGGTGCC--TTGCTCGAGAAGTGTGATAATTATCATTCACTGATCGTCGAGGAGCTTTGTCTCGGCTTCTAACCGCATTGGAAACGATGCAATTTTGA-ACATCTGA
       .........(((((((((.(((......))).)).))).))))..((((((....((.(((((.....))))).))...)))))).......(((((((((..--(((..(((..((((.(((....)))...))))..))).))).......)).))))))).......((((........))))........-........
 CBCs: _____________________________________________________________(_______)_____________________________________________________________________________________________________________________________________
HCBCs: ____________________(________)_____________________________________________________________________(______________________________________________________)________________________________________________
Transferred percentage of helices I: 100
II: 92.857
III: 84.615
IV: 80
Annotation Process: HMM annotation
Start: 414
End: 613

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