Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 4539767

Figure

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Details

GI 4539767 see NCBI Nucleotide
Accession AF119508
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Corticiales Corticiaceae Entomocorticium Entomocorticium sp. B 
Sequence GTGAACTCCTCCACCCTCTATCTTTTTCGGAAGGCATTGGGCTGGGATTTGGGAGCTTGCGGGTCCCTGGCCGATCCGCTCTCCTTGAATACATTAGTGGAGCCCTTGCGGCCTTGGTGTGATAGTCATCTACGCCTCGGCTTAGCGAACTTACCGGGACTCGCTTCCAACCGTCTTGCAAGAGACAACTACTACCAAC
Structure .........(((((((..(.(((((....))))).)..))).)))).((.(((((...((((((((...)..))))))).))))).)).......(((((.((((((((((((..((((((((....))).)))))..))))..)))).......))).)))))).......(((((....))))).............
Method 2: Homology modeled
Energy -53.11 kcal/mol
Model 292453729
Alignment
Sbjct: GTGAACTCCTCCACCCTCCACCTTTTTCGAAGGGTGTTGGGCTGGGATTTGGGAGCATGCGGGTCCCTGGCCGATCCGCTCTCCTTGAATGCATTAGCGAAGCCCTTTGCGGCCTTGGTGTGATAATCATCTACGCCTCGGTTTAGCGAACCTTACGGGAATCGCTTACAGCCGTCTCGCAAGAGACAACGACTACCAACTTGA
       .........(((((((..(((((((....)))))))..))).)))).((.(((((...(((((((.......))))))).))))).))..((...(((((..((((((((((((..((((((((....))).)))))..))))..)))))......)))..)))))....)).(((((....))))).................
Query: GTGAACTCCTCCACCCTCTATCTTTTTCGGAAGGCATTGGGCTGGGATTTGGGAGCTTGCGGGTCCCTGGCCGATCCGCTCTCCTTGAATACATTAGTGGAGCCC-TTGCGGCCTTGGTGTGATAGTCATCTACGCCTCGGCTTAGCGAACTTACCGGGACTCGCTTCCAACCGTCTTGCAAGAGACAACTACTACCAAC----
       .........(((((((..(.(((((....))))).)..))).)))).((.(((((...(((((((.......))))))).))))).)).......(((((..(((-((((((((..((((((((....))).)))))..))))..)))).......)))..))))).......(((((....))))).............----
 CBCs: __________________(________________)________________________________________________________________________________________________________________________________________________________________________
HCBCs: ____________________(_(_(____)_)_)_______________________________________________________________(_(___________(_____________________________)___________________)_)_____________(____)_____________________
Transferred percentage of helices I: 92.857
II: 100
III: 88.889
IV: 100
Annotation Process: Mixed HMM and Genbank annotation
Start: 349
End: 547

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