Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
   
Predict
   
Model
   
Annotate
   
Motif
   
Tools
 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications

ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 4539781

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 4539781 see NCBI Nucleotide
Accession AF119522
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Corticiales Corticiaceae Dendrophora Dendrophora albobadia 
Sequence GTGAACTCCTCCACCCTCTATCTTTTTCGGAAGGCATTGGGCTGGGATTTGGGAGCTTGCAGGTCCCTGGTTGATCCGCTCTCCTTGAATACATTAGCGAAGCCCTTCGCGGCCTTGGTGTGATAATTATCTGCGCCTTGGCTTAGCGAACCTATAGGGACTTGCTTCCAACCGTCTCGCAAGAGACAATCACTTCAAAC
Structure .........(((((((..(.(((((....))))).)..))).)))).((.(((((...((.(((((...)..)))).)).))))).)).......(((((.(((((((((((((..((((((((....))).)))))..))))..)))))......))).)))))).......(((((....))))).............
Method 2: Homology modeled
Energy -57.1 kcal/mol
Model 292453729
Alignment
Sbjct: GTGAACTCCTCCACCCTCCACCTTTTTCGAAGGGTGTTGGGCTGGGATTTGGGAGCATGCGGGTCCCTGGCCGATCCGCTCTCCTTGAATGCATTAGCGAAGCCCTTTGCGGCCTTGGTGTGATAATCATCTACGCCTCGGTTTAGCGAACCTTACGGGAATCGCTTACAGCCGTCTCGCAAGAGACAACGACTACCAACTTGA
       .........(((((((..(((((((....)))))))..))).)))).((.(((((...(((((((.......))))))).))))).))..((...(((((..((((((((((((..((((((((....))).)))))..))))..)))))......)))..)))))....)).(((((....))))).................
Query: GTGAACTCCTCCACCCTCTATCTTTTTCGGAAGGCATTGGGCTGGGATTTGGGAGCTTGCAGGTCCCTGGTTGATCCGCTCTCCTTGAATACATTAGCGAAGCCCTTCGCGGCCTTGGTGTGATAATTATCTGCGCCTTGGCTTAGCGAACCTATAGGGACTTGCTTCCAACCGTCTCGCAAGAGACAATCACTTCAAAC----
       .........(((((((..(.(((((....))))).)..))).)))).((.(((((...((.((((.......)))).)).))))).)).......(((((..((((((((((((..((((((((....))).)))))..))))..)))))......)))..))))).......(((((....))))).............----
 CBCs: __________________(________________)________________________________________________________________________________________________________________________________________________________________________
HCBCs: ____________________(_(_(____)_)_)________________________________________________________________(________(___(________(___________)________)_____)______________)_________________________________________
Transferred percentage of helices I: 92.857
II: 92.857
III: 92.593
IV: 100
Annotation Process: Mixed HMM and Genbank annotation
Start: 352
End: 551

If you use the database please cite.