Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 537961

Figure

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Details

GI 537961 see NCBI Nucleotide
Accession Z37091
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Polyporales Ganodermataceae Tomophagus Tomophagus colossus 
Sequence ATGAAATCTTCAACCTACAAGCCTTTGCGGGTTTGTTAGGCTTGGTTATGGAGGTTTGTCGGCCTTGCGGTCGGCTCCTCTTAAATGCATTAGCTTGATTTCTTGCGAATCGGCTCTCGGTGTGATAGTGTCTATGCCGCGACCGTGAAGCGTTTGGCAAGCTTCTAACCGTCTCATGAGAGACAGCTTCTTGACATCTGA
Structure .........((((((((((((((.....)).)))).)))).)))).(.((((((...(((((((....))))))).))))).)).....((((.(((.((...(((...((((.((.(((((((((...))).)))))).))))).)..)))...))).))...))))..(((..(.((.((....))))).)))......
Method 2: Homology modeled
Energy -31.7 kcal/mol
Model 33325337
Alignment
Sbjct: -----ATTCTCAACCTGCAAAGTGTAATGCTTTTG-TAGGCTTGGATTTGGAGGCTTTCTTTGCTGGCCTTGATGGTCAGCTCCTCTGAAATGCATTAGCTTTGGTTCCTTGCGGATCGGCTCTCGGTGTGATATTTGTCTATGCCGTGACCGTTGAAGCGTTTTGGGCCAGCTTCTAATTGTCTTTTGA-AGACAGCTTTTGTTGACACT---
       -----....((((((((((((((.....)).))))-)))).)))).((((((((........(((((((.....))))))).))))))))....(((((..(((((((..(((....(((.((.(((((((((....))).)))))).))))).....)))....)))))))...)))))((((....((-((....))))....))))..---
Query: ATGAAATCTTCAACCTACAAGCCTTTGCGGGTTTGTTAGGCTTGGTTATGGAGG-----TTTGTCGGCCTTG-CGGTCGGCTCCTCTTAAATGCATTAGC-TTGATTTCTTGCGAATCGGCTCTCGGTGTGATA-GTGTCTATGCCGCGACCG-TGAAGCGTTT--GGCAAGCTTCTAACCGTCTCATGAGAGACAGCTTC--TTGACATCTGA
       .........((((((((((((((.....)).)))).)))).)))).(..(((((-----...(((((((...-.))))))).)))))..).....((((.-((..((...(((....(((.((.(((((((((.-..))).)))))).)))))-....)))...--))..))...))))..(((....((.((....))))--..)))......
 CBCs: _____________________(_______)__________________________________(_____________)_______________________________________________________________________________________________________________________________________
HCBCs: ________________(___(_(_____)__)____)__________________________(_______________)____________________________________________________________________________________________________________(___________)_____________
Transferred percentage of helices I: 100
II: 86.667
III: 86.207
IV: 87.5
Annotation Process: HMM annotation
Start: 27
End: 227

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