Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 537964

Figure

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Details

GI 537964 see NCBI Nucleotide
Accession Z37087
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Polyporales Ganodermataceae Ganoderma Ganoderma fornicatum 
Sequence ATGAAATCATCAACCTAAAACCTTTGCGGTTTTGTAGGCTTGGACTTGGAGGCTTGTCGNCCGTTCTTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTCTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTGGCAAGCNTCTAACGGTCTCAGTTGGAGACAGCTTTATGACCTCTGA
Structure .........(((((((((((((.....)).))).)))).))))..(.(((((...((((((((...).))))))).))))).)......(((((((.(((...(((...((((.((.(((((((((...))).)))))).))))).)..)))...))).)).).)))).((((...(.(((((....)))))))))).....
Method 2: Homology modeled
Energy -29.5 kcal/mol
Model 33325337
Alignment
Sbjct: -----ATTCTCAACCTGCAAAGTGTAATGCTTTTGTAGGCTTGGATTTGGAGGCTTTCTTTGCTGGCC-TTGATGGTCAGCTCCTCTGAAATGCATTAGCTTTGGTTCCTTGCGGATCGGCTCTCGGTGTGATATTTGTCTATGCCGTGACCGTTGAAGCGTTTTGGGCCAGCTTCTAATTGTCTT--TTGAAGACAGCTTTTGTTGACACT---
       -----....((((((((((((((.....)).)))))))).)))).((((((((........(((((((-.....))))))).))))))))....(((((..(((((((..(((....(((.((.(((((((((....))).)))))).))))).....)))....)))))))...)))))((((..--..((((....))))....))))..---
Query: ATGAAATCATCAACCTA-AAACCTTTGCGGTTTTGTAGGCTTGGACTTGGAGGC-----TTGTCGNCCGTTCTTGGTCGGCTCCTCTTAAATGCATTAGC-TTGGTTCCTTGCGGATCGGCTCTCGGTGTGATA-ATGTCTACGCCGCGACCG-TGAAGCGTTT--GGCAAGCNTCTAACGGTCTCAGTTGGAGACAGCTTT--ATGACCTCTGA
       .........((((((((-(((((.....)).))).)))).))))..(.(((((.-----..((((.((......)).)))).))))).)......((((.-((.(((...(((....(((.((.(((((((((.-..))).)))))).)))))-....)))...--))).))...)))).((((......((((....))))--..)))).....
 CBCs: _____________________(_______)_________________________________(______________)_____________________________________________________________________________________________________(____________________________)_____
HCBCs: ________________(_____(_____)______)__________________________(________________)________________________________________________(_____________)________________________________________________(________)______________
Transferred percentage of helices I: 92.857
II: 80
III: 89.655
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma fornicatum see NCBI Taxonomy
257479988 (Method 3) see NCBI Nucleotide
257479989 (Method 3) see NCBI Nucleotide
257479990 (Method 3) see NCBI Nucleotide
257479991 (Method 3) see NCBI Nucleotide
257479992 (Method 3) see NCBI Nucleotide
257479993 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 27
End: 228

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