Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 538019

Figure

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Details

GI 538019 see NCBI Nucleotide
Accession Z37089
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Polyporales Ganodermataceae Ganoderma Ganoderma tropicum 
Sequence ATGAAATCATCAACCTACAANCCTTTGCGGTTTTGTAGGCTTGGACTTGGAGGCTTGTCGNCCGTTCTTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTCTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTGGCAAGCTTCTAANAGTCTCAGTTGGAGACAGCTTTATGACCTCTGA
Structure .........((((((((((((((.....))).))))))).))))....(((((...((((((((....)))))))).)))))..........((((((...((.(((...((((.((.(((((((((...))).)))))).))))).)..)))...)))))))).......((((.(((((....)))))..).)))......
Method 2: Homology modeled
Energy -55.6 kcal/mol
Model 157704069
Alignment
Sbjct: ATGAAATCTTCAACCTGCAAGCTTTTGTGG-TTTGTAGGCTTGGACTTGGAGGCTTGTCGGCCGTTCTCGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTCTCAGTGTGATAATGTCTACGCTGCGACCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTCAGTTGGAGACAACTTTATGACCTCTGA
       ........(((((((((((((((.....))-)))))))).)))))...(((((...((((((((....)))))))).)))))..........((((((...((.(((....(((.((.(((((((((...))).)))))).)))))....)))...)))))))).......(((..(((((....)))))....)))......
Query: ATGAAATCATCAACCTACAANCCTTTGCGGTTTTGTAGGCTTGGACTTGGAGGCTTGTCGNCCGTTCTTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTCTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTGGCAAGCTTCTAANAGTCTCAGTTGGAGACAGCTTTATGACCTCTGA
       .........(((((((((((.((.....))..))))))).))))....(((((...((((.(((....))).)))).)))))..........((((((...((.(((....(((.((.(((((((((...))).)))))).)))))....)))...)))))))).......(((..(((((....)))))....)))......
 CBCs: _______________________________________________________________________________________________________________________(__________________)________________________________________________________________
HCBCs: ________________(_____(_____)______)___________________________(____)___________________________(______________________________________________________________)__________________(________)_______________
Transferred percentage of helices I: 86.667
II: 92.308
III: 100
IV: 100
Annotation Process: HMM annotation
Start: 27
End: 229

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