Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 57282815

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 57282815 see NCBI Nucleotide
Accession AJ627583
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Ganodermataceae ; Amauroderma ; Amauroderma subresinosum 
Sequence ATGAAATCTTCAATCTACAAACCTTTGCGGGTTTTGCAGATTTGGATTTGGAGGCTTGTCGGCCTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTACGGTGTGATAATTGTCTACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCCTAATCGTCTCGTTGGAGACATCTTATTGACCTCTGA
Structure .........(((((((.((((.(((...))).)))).))).)))).((.(((((...((((((...)))))).))))).))....(((((.((.(((...(((...((((.((.(((((((((....))).)))))).))))).)..)))...))).))....))))).(((..(.((((....))).)).)))......
Method 2: Homology modeled
Energy -31.8 kcal/mol
Model 33325337
Alignment 
Sbjct: -----ATTCTCAACCTGCAAA-GTGTAATGCTTTTGTAGGCTTGGATTTGGAGGCTTTCTTTGCTGGCCTTGATGGTCAGCTCCTCTGAAATGCATTAGCTTTGGTTCCTTGCGGATCGGCTCTCGGTGTGATATTTGTCTATGCCGTGACCGTTGAAGCGTTTTGGGCCAGCTT-CTAATTGTCTT-TTGAAGACAGCTTTTGTTGACACT---
       -----....((((((((((((-((.....)).)))))))).)))).((((((((........(((((((.....))))))).))))))))....(((((..(((((((..(((....(((.((.(((((((((....))).)))))).))))).....)))....)))))))...-)))))((((..-..((((....))))....))))..---
Query: ATGAAATCTTCAATCTACAAACCTTTGCGGGTTTTGCAGATTTGGATTTGGAGGC-----TTGTCGGCC----TGGTCGGCTCCTCTTAAATGCATTAGC-TTGGTTCCTTGCGGATCGGCTTACGGTGTGATAATTGTCTACGCCGCGACCG-TGAAGCGTTT--GGCGAGCTTCCTAATCGTCTCGTTGGAGACA--TCTTATTGACCTCTGA
       .........(((((((.((((.((.....)).)))).))).)))).((.(((((.-----..(((((((----.))))))).))))).))....(((((.-((.(((...(((....(((.((.(((((((((....))).)))))).)))))-....)))...--))).))....))))).(((.....(((....--)))....)))......
 CBCs: _____________(________(_______)________)________________________(_____________)________________________________________________________________________________________________________________(________)______________
HCBCs: _______________________________________________________________(_______________)__________________________________________(_____(_____________)_____)__________________________________________________________________
Transferred percentage of helices I: 92.857
II: 93.333
III: 93.103
IV: 75
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured fungus see NCBI Taxonomy
284933994 (Method 3) see NCBI Nucleotide
284934870 (Method 3) see NCBI Nucleotide
284936021 (Method 3) see NCBI Nucleotide
284941782 (Method 3) see NCBI Nucleotide
284942607 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 409
End: 608

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