Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 5764512

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 5764512 see NCBI Nucleotide
Accession AF170010
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Ganodermataceae ; Ganoderma ; Ganoderma lucidum 
Sequence AATCTTCAACCTACGAGCTTTTGTGGTTTGTAGGCTTGGACTTGGAGGCTTGCTGGCCGTTCTTGGTCGGCTCCTCTTAAATGTATTAGCTTGGTTCCTTGCGGATCGGCTCTCGGTGTGATAATGTNTACGCCGCGACCGTGAAGCGCTTTGGGCAAGCTTCTAACCGTGTCACTTGGAGATTGCTTTA
Structure ((..(((((((((((((((.....)))))))))).))))).))(((((...((((((((....)))))))).)))))..........((((((..(((.(((...((((.((.(((((((((...))).)))))).))))).)..)))....))))))))).......((.((.....)).)).......
Method 2: Homology modeled
Energy -50.6 kcal/mol
Model 55820070
Alignment 
Sbjct: ATGAAATMTTCAATCTACAAACTTCTTATGGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTACAGAGACAACTTTTATGACCTCTGA
       ....((..(((((((((((((((((....)))))))))))).))))).))(((((...(((((..(((....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))..................
Query: ----AATCTTCAACCTACGAGCTTT---TGTGGTTTGTAGGCTTGGACTTGGAGGCTTGCTGG--CCGTTCTTGGTCGGCTCCTCTTAAATGTATTAGCTTGGTTCCTTGCGGATCGGCTC-TCGGTGTGATAATGTNTACGCCGCGACCGTGAAGCGC-TTTGGGCAAGCTTCTAACCGTGTCACT-TGGAGATTGCTTTA-----------
       ----((..(((((((((((((((.(---.).)))))))))).))))).))(((((...(((((--(((....)))))))).)))))..........((((((..(((.(((....(((.((-.((((((.((...))..)))))).)))))....))).-...))))))))).......((.((...-..)).)).......-----------
 CBCs: ___________________________________________________________________(____)____________________________________________________________________________________________________________________________________________
HCBCs: _____________(____(_(___(____)___)_)____)__________________((________________))_____________________(___________________(_________________________)____________________)___________(______________)__________________
Transferred percentage of helices I: 94.737
II: 100
III: 92.593
IV: 80
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma sp. PKB91/098 see NCBI Taxonomy
13897703 (Method 3) see NCBI Nucleotide
Annotation Process: Genbank annotation
Start: 7
End: 196

If you use the database please cite.