Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 62903127

Figure

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Details

GI 62903127 see NCBI Nucleotide
Accession DQ003084
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Hypocreomycetidae ; Hypocreomycetidae incertae sedis ; Glomerellaceae ; Glomerella ; Glomerella graminicola 
Sequence ATTTCAACCCTCAAGCTCCGCTTGGTGTTGGGGCCCTACGGTGGACGTAGGCCCTTAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACTAACGTCTCGCATCGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCAATTTTTC
Structure ....((((..((((((...)))))).))))((((.(((((.....)))))))))...........(((((((((((.((((...((((.((((.((..((....))))))))..)))))))))))))..))).)))(.((((.......)))).)
Method 2: Homology modeled
Energy -47.8 kcal/mol
Model 192337560
Alignment 
Sbjct: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCTCTACGGTTGACGTAGGCCCTTAAAGGTAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAACATTTCGTCTCGCATTGGGATTCGGAGGGACTCTAGCCGTAAAACCCCCAATTTTACTAAG
       ....((((..((((((...)))))).))))((((.(((((.....)))))))))...........(((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).)))((((((.......))))))....
Query: ATTTCAACCCTCAAGCTCCGCTTGGTGTTGGGGCCCTACGGTGGACGTAGGCCCTTAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAAC-TAACGTCTCGCATCGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCAATTTTTC----
       ....((((..((((((...)))))).))))((((.(((((.....)))))))))...........(((((((((((.((((...((((.((((.((..((-....))))))))..)))))))))))))..))).)))(.((((.......)))).)----
 CBCs: ________________________________________________________________________________________________________________________________________________________________
HCBCs: _______________________________________________________________________________(________________________________________)_______________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 83.333
Annotation Process: Mixed HMM and Genbank annotation
Start: 288
End: 442

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