Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 18141011

Figure

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Details

GI 18141011 see NCBI Nucleotide
Accession AF411774
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Hypocreomycetidae ; Hypocreomycetidae incertae sedis ; Glomerellaceae ; Glomerella ; Glomerella cingulata ; Colletotrichum gloeosporioides 
Sequence ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACAGCTGATGTAGGCCCTCAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACTTTACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAATTTTCC
Structure ..........((((((...))))))..((((((.((((((.....)))))).)))))).......(((((((((((.((((...((((.((((.(((.(...))).)..))))..)))))))))))))..).)))))(.((((........)))).)
Method 2: Homology modeled
Energy -37 kcal/mol
Model 17426647
Alignment 
Sbjct: ----CAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACGTCTGACGTAGGCCCTCAAAGACAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAAC-TAACGTCTCGCACTGGGATTCGGAGGGACTCTTGCCGTAAAACCCCCAATTTTTACAG
       ----......((((((...))))))..((((((.(((((((...))))))).)))))).......(((((.(((((.((((...((((.((((..((...-..))....))))..)))))))))))))....)))))((((((........))))))..
Query: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACAGCTGATGTAGGCCCTCAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACTTTACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAATTTTCC--
       ..........((((((...))))))..((((((.((((((.....)))))).)))))).......(((((.(((((.((((...((((.((((..((......))....))))..)))))))))))))....)))))(.((((........)))).)--
 CBCs: _______________________________________(_____)_________________________________________________________________________________________________________________
HCBCs: _______________________________________________________________________________(________________________________________)______________________________________
Transferred percentage of helices I: 100
II: 92.308
III: 100
IV: 83.333
Annotation Process: Mixed HMM and Genbank annotation
Start: 347
End: 503

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