Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 62903147

Figure

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Details

GI 62903147 see NCBI Nucleotide
Accession DQ003104
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Hypocreomycetidae ; Hypocreomycetidae incertae sedis ; Glomerellaceae ; Glomerella ; Glomerella graminicola 
Sequence ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACGGTTGACGTAGGCCCTCAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACTAACGTCTCGCATCGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAATTTTTC
Structure ....((((..((((((...)))))).))))((((.(((((.....)))))))))...........(((((((((((.((((...((((.((((.((..((....))))))))..)))))))))))))..))).)))(.((((........)))).)
Method 2: Homology modeled
Energy -48.1 kcal/mol
Model 192337560
Alignment 
Sbjct: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCTCTACGGTTGACGTAGGCCCTTAAAGGTAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAACATTTCGTCTCGCATTGGGATTCGGAGGGACTCTAGCCGTAAAA-CCCCCAATTTTACTAAG
       ....((((..((((((...)))))).))))((((.(((((.....)))))))))...........(((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).)))((((((-.......))))))....
Query: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACGGTTGACGTAGGCCCTCAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAAC-TAACGTCTCGCATCGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAATTTTTC----
       ....((((..((((((...)))))).))))((((.(((((.....)))))))))...........(((((((((((.((((...((((.((((.((..((-....))))))))..)))))))))))))..))).)))(.((((........)))).)----
 CBCs: _________________________________________________________________________________________________________________________________________________________________
HCBCs: _______________________________________________________________________________(________________________________________)________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 83.333
Annotation Process: Mixed HMM and Genbank annotation
Start: 306
End: 461

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