Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 722287

Figure

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Details

GI 722287 see NCBI Nucleotide
Accession U22114
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Metazoa ; Eumetazoa ; Bilateria ; Coelomata ; Protostomia ; Panarthropoda ; Arthropoda ; Mandibulata ; Pancrustacea ; Hexapoda ; Insecta ; Dicondylia ; Pterygota ; Neoptera ; Endopterygota ; Diptera ; Nematocera ; Culicimorpha ; Culicoidea ; Culicidae ; Culicinae ; Culicini ; Culex ; Culex ; Culex pipiens complex ; Culex pipiens 
Sequence TATATTTATCTATTCAACTGTGCACGCAGTGCACGCAGAATGGTGTTTTGCTGCCTTCGGTGGCTGGCAAAACATTCAAGACGCTCAGCGGCTCGGGGTTTTCGTTCGCGGACGGCCACACTGGTGCGCACGCACGCGACTGAACGGACGACGACGGTGAGAATACATCCCACACACCAACCTGGCTTGGGCGCCGATGTAGCATCTCTCACGCCACGTCGTCGTCACACGTTCGGTCATCCGGCGTCGTCGCGGTACCGCGTCCACAGAACAGAACAACCCAACACACGAGCATGCGATAATAGCGACAAGATAAACCCCATGTA
Structure .........((((((...(((((((...)))))))..))))))(((((((((((((...).))).))))))))).......((((.((((((((((((((((((((((.(((((.......(((((((((((.((((((((((((((((((((((((((((((((((((...(.(.(((((...).))))).)..))))))...).))))))....)))))))))).)..)))))))).....))))))).)).))))))))))).).)))).))).)))))......))))).)))..)...)))).....(((.......))).
Method 2: Homology modeled
Energy -105.71 kcal/mol
Model 213133645
Alignment 
Sbjct: TATATTTATCTATTCAACTGTGCACGCAGTGCACGCAGAATGGTGTTTTGCTGCCTTCGGTGGCTGGCAAAACATTCAAGACGCTCAGCGGCTCGGGGTTTTCGTTCGCGGACGGCCACACTGGTGCGCACGCACGCGACTGAACGACTGGACGACGACGGTGAGAATACATCCCACACACCAACCTGGCTTGGGCGCCGATGTAGCATCTCTCACG-CACGTC-TCGTCACACACGTTCGTTCGGTCATCCGGCGTCGTCGCGGTACCGCGTCCACAGAACAGAACAACCCA--ACACGAGCA-GCG---ATAGCG--AAGATATACCCCATGTA
       .........((((((...(((((((...)))))))..))))))((((((((((((......))).))))))))).......((((..((.(((((((((((((((((..(((((.......(((((((((((.((((((((((((((.(((((((.((((((((((.((((((.......((((......)))).....)))))).....)))))).-..))))-))))).)).....)))))))))).....))))))).)).)))))))))))...)))).))).))))).--...))))).-)).---..))))--...((((.....)))).
Query: TATATTTATCTATTCAACTGTGCACGCAGTGCACGCAGAATGGTGTTTTGCTGCCTTCGGTGGCTGGCAAAACATTCAAGACGCTCAGCGGCTCGGGGTTTTCGTTCGCGGACGGCCACACTGGTGCGCACGCACGCGACTGAAC----GGACGACGACGGTGAGAATACATCCCACACACCAACCTGGCTTGGGCGCCGATGTAGCATCTCTCACGCCACGTCGTCGTCACA------CGTTCGGTCATCCGGCGTCGTCGCGGTACCGCGTCCACAGAACAGAACAACCCAACACACGAGCATGCGATAATAGCGACAAGATAAACCCCATGTA
       .........((((((...(((((((...)))))))..))))))((((((((((((......))).))))))))).......((((..((.(((((((((((((((((..(((((.......(((((((((((.((((((((((((----((((((.((((((((((.((((((.......((((......)))).....)))))).....))))))....)))).))))).).------.)))))))).....))))))).)).)))))))))))...)))).))).)))))......)))))..))......)))).....(((.......))).
 CBCs: ________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 96.25
IV: 75
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Metazoa see NCBI Taxonomy
Eumetazoa see NCBI Taxonomy
Bilateria see NCBI Taxonomy
Coelomata see NCBI Taxonomy
Protostomia see NCBI Taxonomy
Panarthropoda see NCBI Taxonomy
Arthropoda see NCBI Taxonomy
Mandibulata see NCBI Taxonomy
Pancrustacea see NCBI Taxonomy
Hexapoda see NCBI Taxonomy
Insecta see NCBI Taxonomy
Dicondylia see NCBI Taxonomy
Pterygota see NCBI Taxonomy
Neoptera see NCBI Taxonomy
Endopterygota see NCBI Taxonomy
Diptera see NCBI Taxonomy
Nematocera see NCBI Taxonomy
Culicimorpha see NCBI Taxonomy
Culicoidea see NCBI Taxonomy
Culicidae see NCBI Taxonomy
Culicinae see NCBI Taxonomy
Culicini see NCBI Taxonomy
Culex see NCBI Taxonomy
Culex see NCBI Taxonomy
Culex pipiens complex see NCBI Taxonomy
Culex pipiens see NCBI Taxonomy
722300 (Method 3) see NCBI Nucleotide
722304 (Method 3) see NCBI Nucleotide
Culex pipiens x Culex quinquefasciatus see NCBI Taxonomy
988234 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 875
End: 1200

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