Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 13897672

Figure

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Details

GI 13897672 see NCBI Nucleotide
Accession AF255132
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Ganodermataceae ; Ganoderma ; Ganoderma sp. ME-GAN24 
Sequence ATGAAATCTTCAATCTACAAGCTTCTTATGGGAGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCTTTACAGGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTANNGAGACAACTTTATGACCTCTGA
Structure ....((..(((((((((((((((((....))).))))))))).))))).))(((((...(((((.(((....)))))))).)))))..........((((((..(((((((...((((.(((.(((((((((...))).)))))))))))).)..))).)...))))))))).......(((((.(...)))))).................
Method 2: Homology modeled
Energy -45 kcal/mol
Model 55820070
Alignment 
Sbjct: ATGAAATMTTCAATCTACAAACTTCTTATGGG-GTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTACAGAGACAACTTTTATGACCTCTGA
       ....((..(((((((((((((((((....)))-))))))))).))))).))(((((...(((((..(((....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))..................
Query: ATGAAATCTTCAATCTACAAGCTTCTTATGGGAGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGT-CCTTTACAGGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTANNGAGACAAC-TTTATGACCTCTGA
       ....((..(((((((((((((((((....))).))))))))).))))).))(((((...(((((.-(((....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))...-..............
 CBCs: ______________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ____________________(_____________)___________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma applanatum see NCBI Taxonomy
90109985 (Method 3) see NCBI Nucleotide
90109998 (Method 3) see NCBI Nucleotide
Ganoderma sp. PKB96/330 see NCBI Taxonomy
13897645 (Method 3) see NCBI Nucleotide
Ganoderma sp. PKB93/035 see NCBI Taxonomy
13897649 (Method 3) see NCBI Nucleotide
Ganoderma sp. TAI-01 see NCBI Taxonomy
13897651 (Method 3) see NCBI Nucleotide
Ganoderma sp. TAI-04 see NCBI Taxonomy
13897653 (Method 3) see NCBI Nucleotide
Ganoderma sp. SYBC-L16 see NCBI Taxonomy
326368773 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 104
End: 315

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